Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium669g00002 ATGGCTTCTGCAACAACTGCAAACGACACTGCTACTGCTTCTTCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGACTGCATCTTTGCACCCTACTTTTGCTCCGAACAAGGAGCTGCTAGATTCGCAACCATTCATAAGGTTTTCGGGGCTAGCAACGTTTCCAAGTTGCTCTTGCGTATACCAGAAAACGATCGTTTTGAGGCAATGCTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAACTAGTGGAAATGAAGGCACTGCTGGATCAGAACCAGATGGTGTACAGAAACATGGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTCAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCGCTTGACTCAATTGATTACAGCAGCAATATAAATGATGGAATGAGCATGCAAGATGCACAAAACGGAGATGATTTCTCATTCCAAGCTTGTTCTTGGAAAAGATCACACAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTCAGAATAATGAGAAAGTGTGATTAG 654 0.4541 MASATTANDTATASSSSSFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFATIHKVFGASNVSKLLLRIPENDRFEAMLTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVEMKALLDQNQMVYRNMENHWSENVGQAFNPFRPTSMNNPISPQSSLDSIDYSSNINDGMSMQDAQNGDDFSFQACSWKRSHSNDLGELQELALRIMRKCD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium669g00002 217 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
Vium669g00002 217 MobiDBLite consensus disorder prediction 1 21 - -
Vium669g00002 217 Coils Coil 102 122 - -
Vium669g00002 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 174 - -
Vium669g00002 217 Pfam Lateral organ boundaries (LOB) domain 22 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium669g00002 Vium-Chr669 6921 8283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium669g00002 4 214 AS2 family AT2G42430 48.425 4.76e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium669g00002 LOB 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium669g00002 K13944 - gmx:100776145 314.309