Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6698g00009 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCTGACGTTAGCTTCACATCCAAGGTTGTCGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCCTGAAAGATCGGAAATATCCGACGGGGCTTCGGACGAACCGAGCGACGGAATCAGGGTATTGGAAAACCACCGGAAAAGATAAGGAGATATTTGGCGGTGGAGTTTTGATAGGGATGAAGAAAACTTTGGTGTTTTATATGGGTAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGTTATGCATGAATATAGACTTCAAAACAAGCAGCCCTATAGATCTTCTAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAGCTCAGCACCAAAGAAAGCGCAGCAGACATCATCCTCTCAACCATCTCAAGAGTCTCCTACCTCAATGGCGAATGAATTTGGTGATGCAGACCTACCAAATCTGAATAGCATTGCAAATTCATCTAGTGTTGCAGCACAAATTTACAACAGCACTGGTGATCCCAGCAATGTCAGCACAAACATGAACTCGACCATGAATTGGCCTTCTGCAACTGAGCTTCCATCTCTTCCATGGCCTTCTGGGTTGATGCTGAATCCAAACCTTTCTGTCAATTCATTGCTTCTCAGGGCATTGCAGCTTAGGAGTACATATCAACAAAGAGAAGCTGCAACTGGTGATCACTTTGCAACGTACGTTCCTCAAACATTTCCTCACAATAATATTGGAACTGATAATCTCACTCCAAATCTCAGTGTCTCAGCTTCTTCCAGAGCTTTAGAACTGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 936 0.4391 MEENLPPGFRFHPTDEELITYYLLRKVSDVSFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKQPYRSSKEEWVICRVFQKSSAPKKAQQTSSSQPSQESPTSMANEFGDADLPNLNSIANSSSVAAQIYNSTGDPSNVSTNMNSTMNWPSATELPSLPWPSGLMLNPNLSVNSLLLRALQLRSTYQQREAATGDHFATYVPQTFPHNNIGTDNLTPNLSVSASSRALELQEQPFNMDSIW 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6698g00009 311 MobiDBLite consensus disorder prediction 155 183 - -
Vium6698g00009 311 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vium6698g00009 311 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vium6698g00009 311 MobiDBLite consensus disorder prediction 155 175 - -
Vium6698g00009 311 FunFam NAC domain-containing protein 100-like 14 155 - -
Vium6698g00009 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 207 - -
Vium6698g00009 311 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Vium6698g00009 311 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6698g00009 Vium-Chr6698 68512 71139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6698g00009 1 311 NAC Transcription Factor Family AT3G18400 56.193 1.18e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6698g00009 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6698g00009 - - gmx:100775645 486.493