Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6698g00003 ATGGCAGAATTCACTGCAGATTTGCAAAGCATTAGACCCTCCTTTCCTTTCTTGGATATCGATAACATGGAAATTCAAAACTTGGTGCCCTTTGACAGCTTATTGGGCTCTACAGAACCTGAATTTCCAGGAAACTTGGAAGAGAATTTTCCGGGTCTTTTTCAATGCGTGGATCACAATGCAGTTCCAGCGTTAAATGAAGTTCATGAAGGTAAAAAGAGGGAAGCAACTGATATGGGTGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAAGACAAAAAATATTTGTGGAAGAGGCAAGAGAGAGAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCGATAATGTTGGACGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTAGAGTTCCTCTCAATGAAGCTGAGTGCAGCAAGTAGCTATTACGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGAAGAAAGGCATCCGAGGCGAAAGAGATAGGGAAGTATGTGAGAGAAGGAAGTGATGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTACCTGTAA 735 0.4218 MAEFTADLQSIRPSFPFLDIDNMEIQNLVPFDSLLGSTEPEFPGNLEENFPGLFQCVDHNAVPALNEVHEGKKREATDMGDPSSGNSTPDISESGSKTKNICGRGKREKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASSYYDFNSESDALETMQRRKASEAKEIGKYVREGSDEGVSCFEATWPWYL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6698g00003 244 MobiDBLite consensus disorder prediction 100 118 - -
Vium6698g00003 244 FunFam transcription factor BEE 3-like 127 198 - -
Vium6698g00003 244 CDD bHLH_AtBPE_like 121 205 - -
Vium6698g00003 244 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 207 IPR024097 GO:0006355
Vium6698g00003 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Vium6698g00003 244 SMART finulus 136 186 IPR011598 GO:0046983
Vium6698g00003 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Vium6698g00003 244 Gene3D - 127 199 IPR036638 GO:0046983
Vium6698g00003 244 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Vium6698g00003 244 MobiDBLite consensus disorder prediction 80 99 - -
Vium6698g00003 244 MobiDBLite consensus disorder prediction 72 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6698g00003 Vium-Chr6698 25321 27122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6698g00003 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.970 2.74e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6698g00003 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6698g00003 - - vun:114179606 418.313