Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6698g00002 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGCGAAGATGACAATGAACTTAGAAGAGGGCCCTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTGATCACGGGGAAGGCCGATGGAACTTGCTGGCTAAACGTTCAGGATTAAAGAGAACTGGTAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTGAAACGAGGAAATTTAACCCCACAAGAGCAACTTTTAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAGCATTTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCCAGACATTTGAAAATTGAGACTGACAGCAGAGAATTTCAAGAGCTTGTAAGGCGTTTTTGGATGCCAAGATTGCTTCAGAAGGTAAAAGAGTCATCGTCTTCTTCGGCCATGTCGATTCAGAATCAGGCAATTCCTTTGGTTCTTGATGATGGTGTTTCTCAACAGTCAACTATTGGGACCATACCATGGCAGGGAGCTTGCGTGAGTATGAATGGAGGTAGTCCCACTTATATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAGTGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATGCCAAAAGTGGCTCATCATTTTGGACACACCATGGACCAATTCCATTCCCTAAGCAACAATGACTTTGGCACTTACTCATTTGATCCTTATCATGTAAATGACAATGCATATGAGATGGAGACCTTCAAAGCAGCAACTGCAAAGGTGGCTCAGGATGTGCAATACCCAATTGCTGACTGTCAACCGGCAGGAACCGATTGGCTAAGCAACGATTTTGCATGTACCATTTGGAACATCGATGAACTGTGGCAGTTTAGCAAGTTACAAAAATAA 945 0.4265 MSTSKSVSSSSEDDNELRRGPWTLEEDNLLSQYISDHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIETDSREFQELVRRFWMPRLLQKVKESSSSSAMSIQNQAIPLVLDDGVSQQSTIGTIPWQGACVSMNGGSPTYMDQHEQNSDSEHNSGSCISFSESANMPKVAHHFGHTMDQFHSLSNNDFGTYSFDPYHVNDNAYEMETFKAATAKVAQDVQYPIADCQPAGTDWLSNDFACTIWNIDELWQFSKLQK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6698g00002 314 Gene3D - 75 118 - -
Vium6698g00002 314 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Vium6698g00002 314 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vium6698g00002 314 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Vium6698g00002 314 Gene3D - 19 71 - -
Vium6698g00002 314 FunFam MYB transcription factor 75 117 - -
Vium6698g00002 314 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vium6698g00002 314 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Vium6698g00002 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vium6698g00002 314 FunFam Myb transcription factor 19 71 - -
Vium6698g00002 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Vium6698g00002 314 SMART sant 18 68 IPR001005 -
Vium6698g00002 314 SMART sant 71 119 IPR001005 -
Vium6698g00002 314 CDD SANT 76 115 IPR001005 -
Vium6698g00002 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium6698g00002 314 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6698g00002 Vium-Chr6698 11119 12622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6698g00002 14 309 MYB Transcription Factor Family AT1G68320 46.497 4.39e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6698g00002 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6698g00002 K09422 - gmx:778042 516.924