Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6693g00005 ATGAAACAGAGCACATGCGACTATTGTGGGGACTTCACTGCTCTTCTATATTGCAGAGCAGATTCTGCAAAGTTATGTTTCTTCTGTGACCGCAAAGTCCACTTTCCCAACCAGATTTTCTCCAAGCACTCCCGCACACAGCTCTGTGATGGCTGTGCCGATTCCCCTGCATCGGTGCTCTGTTATACAGAGAACTCTGTTTTCTGCCACCACTGTGACTGCCAAAACCATAACAACCACTTGCTGTCTCGGCAACACCAACGAAGATCCCTTCAGGGGTTCTCTGGCTGCCCTTCTGTCACTCAGATGTTAATGTTTTTGGGTCTTACCGAAGAATCTCTCCTTTCAACTGAGGGAGGAAGTTCCCATCACGACGGCCTTTCCAATTTGCACGTGTGGAATGCTCCTTCTGTTTTTGGTCCTGAAGATTTCATTTCTTCCTCTTCTTCTTATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAGAGAAGAAATTGTGAGTCAGCTCGGAGAACTAATAAAGTTGGAGGCTGACTTGATTGGTGGAGAAGTAGATGCTGCTGAACCACAAAAGCAATTTGAAAATTTGTCTACGGGTTTTGAACGTGACACAGAGACTAATATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCGTGCAAATCAAATTGTTCCTTCTGATAATTCGGTGAGTGATTATAGTAAGAAGCAAGGACAACCATCAAATTATTTAAAGCCTCCTAAAGAGTTAACAAGTCATGAAAGAGATTCGGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGGTATCACAAGCAAATCAGATACGAATCACGAAAAGTTCGCGCAGAAAGCAGAATGAGAATTAAGGGTCGGTTTGTGAAAGATGAAACACAAAAATAA 927 0.4326 MKQSTCDYCGDFTALLYCRADSAKLCFFCDRKVHFPNQIFSKHSRTQLCDGCADSPASVLCYTENSVFCHHCDCQNHNNHLLSRQHQRRSLQGFSGCPSVTQMLMFLGLTEESLLSTEGGSSHHDGLSNLHVWNAPSVFGPEDFISSSSSYKNRKGACGRQREEIVSQLGELIKLEADLIGGEVDAAEPQKQFENLSTGFERDTETNMFPSYEAGVFCWHGESSDRANQIVPSDNSVSDYSKKQGQPSNYLKPPKELTSHERDSALLRYREKKKTRRYHKQIRYESRKVRAESRMRIKGRFVKDETQK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6693g00005 308 MobiDBLite consensus disorder prediction 229 279 - -
Vium6693g00005 308 ProSiteProfiles CCT domain profile. 262 304 IPR010402 GO:0005515
Vium6693g00005 308 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vium6693g00005 308 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vium6693g00005 308 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vium6693g00005 308 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vium6693g00005 308 MobiDBLite consensus disorder prediction 229 253 - -
Vium6693g00005 308 MobiDBLite consensus disorder prediction 255 270 - -
Vium6693g00005 308 CDD Bbox1_BBX-like 6 48 - -
Vium6693g00005 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 304 - -
Vium6693g00005 308 Pfam CCT motif 262 304 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6693g00005 Vium-Chr6693 93884 95914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6693g00005 6 277 C2C2-CO-like Transcription Factor Family AT2G47890 33.443 1.18e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium6693g00005 CCT 3.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6693g00005 - - vun:114189938 495.738