Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium668g00003 ATGGGGATTGTAACATGCATTTCTCTGGCGATTATGGTCACAGTTTTCTGCCCTTCTTCTCTTGCTCTCACCCTGGATGGTCTGACCTTGTTGGAAATAAAAAGTGCTTTGAATGATACTAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGACTCATTGTAGATGGACTGGTATCTCTTGCCACCCTGGCGATGACCAAAGAGTTCGCATAATAAATCTGCCATACATGCAACTTGGAGGAATTTTATCTCCCAGCATTGGTAAACTCAGTGGACTACAAAGGCTGGCCCTTCATCAGAACAGCTTGCATGGAACCATTCCTAATGAACTTACCAATTGTTCTGATCTAAGAGCACTGTACTTGAGGGGTAACTTTTTTGAAGGAGGCATACCGTCAAACATTGGAAATCTTTCATATTTGAATATATTGGATTTATCGAGTAACTTATTGAAAGGTGCCATACCTTCCTCTATTGGCCGTCTCTCACAATTGCAAATTCTGAACTTGACTACCAATTTCTTTTCTGGTGAAATTCCTGACATTGGAGTACTGAGCACCTTTAGCAAATACTCGTTTGAGGGAAATTCAGATCTTTGTGGGCGGCAAATCGAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTGGTGCTCCCCCATGCTGAAAGTGATCAAGCTGCAGTCCCTGCCAAAAGGTCTTCACGTTACATGAAGGTACTGTTAATTTATGCAATTGCAATTATGGGTATCGCACTTGTCATGGTGCTTTCATTTCTGTGGACTCGTTTGATATCAAAGAAAGAGCGAGCTGCAAAGAGATACACGGAAGTCAAGAAACAAGTTCATCCAGGAGCTAGCGCAAAACTTATTACATTCCATGGTGATCTGCCGTACACATCGTCTGAGATCGTAGAGAAGCTGGAGTCTCTAGATGAAGAGAATATATTAGGATCCGGAGGATATGGTACTGTTTACCGAATGGAGATGAATGATCGTCGTCTATTTGCTGTTAAACGGATTGATCGAAGTTATGAAGGGTCCGATCAAGTGTTTGAAAGGGAACTCGAGATCTTGGGGAGCATCAAACACACAAATCTTGTAAATATGCGTGGTTACTGCAGGCTTCCTTCTTCAAGATTCCTTATCTATGACTATTTGGTCTTAGGCAGCTTAGATGATGTCTTGCATGAAAATACTCAAGAAATCCTAGTACCGAACTGGAGTGATCGCCTAAAGATAGCTCTTGGTGCTGCCCGGGGTTTGGCTTACTTGCACCACGAATGCAGCCCAGAAATTGTTCACCGTAATATAAAATCTAGCAACATACTCTTTGATGAATGCATGGAGTCACATATATCCGATTTGGGCCTTGCAAAGCTTTTGGTCGATGAGGAGGCACATGTTACCACAGTGGTAGCTGGCACATTTGGTTATTTGGCACCAGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCGGATGTGTATAGCTTTGGAGTTCTTTTACTCGAACTTGTAACTGGGAAGAGGCCAACAGATCCATCTTTTGTGAGAAGAGGTTTAAATGTTGTTGGTTGGGTGAACACATTACTGAGAGATAACAAAATGAAAGACGTGGTGGACAAAAGATGCAGAATTGCAGATGAAGGAACCCTTGAAGTTATTCTTGAGCTAGCATTAAGATGCACAGATGGAAATGCAGATGATCGTCCATCAATGAACGAGGTGTTACAGTTGCTGAAGCAAGAGGTTATGTCCTGTCCAAGCGAGTTTTATGAGTCTGATTCAGATTACTGA 1800 0.4228 MGIVTCISLAIMVTVFCPSSLALTLDGLTLLEIKSALNDTKNVLSNWQEFDETHCRWTGISCHPGDDQRVRIINLPYMQLGGILSPSIGKLSGLQRLALHQNSLHGTIPNELTNCSDLRALYLRGNFFEGGIPSNIGNLSYLNILDLSSNLLKGAIPSSIGRLSQLQILNLTTNFFSGEIPDIGVLSTFSKYSFEGNSDLCGRQIEKPCRTSLGFPVVLPHAESDQAAVPAKRSSRYMKVLLIYAIAIMGIALVMVLSFLWTRLISKKERAAKRYTEVKKQVHPGASAKLITFHGDLPYTSSEIVEKLESLDEENILGSGGYGTVYRMEMNDRRLFAVKRIDRSYEGSDQVFERELEILGSIKHTNLVNMRGYCRLPSSRFLIYDYLVLGSLDDVLHENTQEILVPNWSDRLKIALGAARGLAYLHHECSPEIVHRNIKSSNILFDECMESHISDLGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVRRGLNVVGWVNTLLRDNKMKDVVDKRCRIADEGTLEVILELALRCTDGNADDRPSMNEVLQLLKQEVMSCPSEFYESDSDY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium668g00003 599 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium668g00003 599 SUPERFAMILY Protein kinase-like (PK-like) 294 581 IPR011009 -
Vium668g00003 599 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vium668g00003 599 Gene3D Transferase(Phosphotransferase) domain 1 388 593 - -
Vium668g00003 599 Gene3D Phosphorylase Kinase; domain 1 271 386 - -
Vium668g00003 599 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Vium668g00003 599 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 186 - -
Vium668g00003 599 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium668g00003 599 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Vium668g00003 599 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 583 - -
Vium668g00003 599 SUPERFAMILY L domain-like 26 189 - -
Vium668g00003 599 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515
Vium668g00003 599 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium668g00003 Vium-Chr668 36444 40571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium668g00003 22 589 Receptor kinase-like Gene Family AT2G35620 48.155 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium668g00003 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium668g00003 - - gmx:100803920 1012.68