Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium668g00001 ATGGCGGCTGGAAGGGCTTTTTCCGACATCACTGCCTTCCTTCGCAACCAAACAGCTCTTCCCACTTCCCAACCTCTCGATTCTCTCTTCCTCTCTTCTTCCACTGCTCCTTTTCTCGGTTCGAGATCCATGATGAGCTTCGAAGGAGAAGGAGGGAAGGGGTGTAACGGTTCCTTCTTCCGCGCGTTTGATATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCTGAGAAGAAGCGCCGTCTCTCTGCCAATCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGACCTTGGTCTGCAGCCACGACAAGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGCTGGAAGACCAAACAGCTCGAGAAGGACTACGAGATTCTGCATGAGAGCTATGAGAGTCTCAAGGCCAACTACGAAATCCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGCGAGAAGGTGCTTGCAAGAGAGAAAGAAGAGGGGCAGTCGAAGCAGGCCGAAAGTGGAACAAAGAGGTTGCAGGAACAGGATCAGGAACCACCGCAAAGGCCTGTACTTGATTCAGTTTCGGAAGGTGAAGGATCCAAAGTGTCTTGTGTTGTTGGGGGTTGCAAACAGGAAGATATCAGCTCAGCCAGGAGTGACATTTTGGACTCCGACAGCCCGCATTACACGGATGGAGTACACTCGGCGGTGCTAGAGCACGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCGGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCTTCCTACCTCTTTCCGAAACTCGAAGATGCGGATTACTCCGACCCAACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGCTCTTTGGAACTGGGAGTACTAA 975 0.4995 MAAGRAFSDITAFLRNQTALPTSQPLDSLFLSSSTAPFLGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEILHESYESLKANYEILLKEKDKLKSEVAHLSEKVLAREKEEGQSKQAESGTKRLQEQDQEPPQRPVLDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHALWNWEY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium668g00001 324 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Vium668g00001 324 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Vium668g00001 324 MobiDBLite consensus disorder prediction 179 203 - -
Vium668g00001 324 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Vium668g00001 324 SMART HOX_1 80 141 IPR001356 GO:0003677
Vium668g00001 324 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Vium668g00001 324 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Vium668g00001 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 208 IPR045224 GO:0003700
Vium668g00001 324 FunFam Homeobox-leucine zipper protein HAT5 75 139 - -
Vium668g00001 324 CDD homeodomain 82 138 IPR001356 GO:0003677
Vium668g00001 324 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
Vium668g00001 324 Coils Coil 136 184 - -
Vium668g00001 324 Gene3D - 76 144 - -
Vium668g00001 324 MobiDBLite consensus disorder prediction 179 220 - -
Vium668g00001 324 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium668g00001 Vium-Chr668 20960 23193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium668g00001 21 255 Homeobox Transcription Factor Family AT3G01470 40.664 5.02e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium668g00001 Homeodomain 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium668g00001 - - gmx:100799054 542.732