Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6688g00006 ATGTACCATCAGCAGCAGCAGCAGATAGCAGCAAGAAACTTGCATGCTTTAAGGATGCACAGCCACACTGAGAGGCATATGATGATGCAAGGAGGCAATGGGGCTTGTGATTCAGGACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAATACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAATAAAATTGAAGCAACAAGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATTAATGATGCCTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGCAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGTCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAGCTACAGGTTCTGTGGCCACAGCAAACACAAGAGGGCCAAGCCACTGAGTGTTCAATGGGGAGTTTCTTGACATATAGTGAGGATTCTCAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTTCAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCATTTGAAGCCTGATCTCACATTGAGTGAAGATGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTCTTACAAGAAGGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGGTGGAAGGTAAGAAACAGCACTGAATCTGGGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTCCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1245 0.412 MYHQQQQQIAARNLHALRMHSHTERHMMMQGGNGACDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATSRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQEGQATECSMGSFLTYSEDSQRDRETHNMSLNLIAFNGPPFSVSKDCVEESMHLKPDLTLSEDVKQNMMFLSSSSDGKVVKGDFLQEGPSSLLSMNVGVLEEEKFGRTTLSKEEGWKVRNSTESGRMAVKLNHEKISPDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6688g00006 414 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Vium6688g00006 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Vium6688g00006 414 Gene3D - 46 104 - -
Vium6688g00006 414 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Vium6688g00006 414 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Vium6688g00006 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 269 IPR044848 GO:0003700
Vium6688g00006 414 Coils Coil 146 166 - -
Vium6688g00006 414 FunFam Myb family transcription factor 46 104 - -
Vium6688g00006 414 Pfam MYB-CC type transfactor, LHEQLE motif 144 191 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6688g00006 Vium-Chr6688 57065 60364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6688g00006 79 413 G2-like Transcription Factor Family AT3G04030 48.529 3.12e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium6688g00006 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6688g00006 - - gmx:100786282 727.628