Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6688g00002 ATGGAGAATAATGACATGGAAGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAACCCAATTAGTGATACTGAGAACATATGCCCATTTTGCGAGACAGAGGTTTCTGAGGTAATGGAGAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGGATTGCTCCACATGGGGGAAGCAGCTCAAGGGGGGAGGAAGAAGAGGTTGAGCAGCAGATGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTTTTCAGAGGACTTCATGTTAGGATGGTGTCTGAGTCTGAAAATCTTGAAGACAATAGGAACATGGATGGCAGCAGCATACTTGTGATTGATCCATTCAATGAAGGTGCACTAATTGTGAGAGGCCCTAACATGAACCACACAAGTAGTCCAAATGAGAACAATGCTGTTGGGAGCTCCCTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTGCAACACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGGTTGGGAATGAAGCAAAGGAGATGCCATGCAAGCATATGTTCCATGATGATTGCATTGTCTCATGGCTAAAACTTCACGGTTCTTGTCCAGTATGCAGGTTTCAGATGCCATATGAGGATTCAAATGTTGAAGCCAATGTGGGAAATGGAACTGAAAATCATAACAGTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCATTCAGCAATTTTCTTCCTTCTCCCTGA 969 0.4489 MENNDMEGVHWCNICSKMVNPISDTENICPFCETEVSEVMENLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRGEEEEVEQQMENELVLGRRRRTSSYMMHLFRGLHVRMVSESENLEDNRNMDGSSILVIDPFNEGALIVRGPNMNHTSSPNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGNEAKEMPCKHMFHDDCIVSWLKLHGSCPVCRFQMPYEDSNVEANVGNGTENHNSELVRAGEERPRNGRRNWFPVLQSFSNFLPSP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6688g00002 322 Pfam Ring finger domain 226 268 IPR001841 -
Vium6688g00002 322 SUPERFAMILY RING/U-box 217 274 - -
Vium6688g00002 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 272 - -
Vium6688g00002 322 FunFam E3 ubiquitin-protein ligase RNF181 199 274 - -
Vium6688g00002 322 SMART ring_2 227 267 IPR001841 -
Vium6688g00002 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 274 IPR013083 -
Vium6688g00002 322 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6688g00002 Vium-Chr6688 32657 34151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6688g00002 91 287 C3H Transcription Factor Family AT1G26800 30.808 1.13e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6688g00002 - K11982 gmx:100790855 570.852