Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00058 ATGCAGGATCCAGCGTTGTTCCAGCCCTTGAAACCCCACTTTCCCGAACAAGAGCAGCTTAAGTGTCCGCGTTGCGATTCCGTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCGCAGCCGCGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCGTCGGGGGTGGAAGCAGAAAGAACGCCAAACGATCATCCTCATCCGCCAACACCAAACGCGCTTCCCCGTCACCTGCTCCAGAACCCGACCCGACTCGTGTTTGCCCTAGCCCGGTTGTTGGTGGTGGTGGGAATTTCGGTTCCCTTTTGGCATCGGGTGCTCATTTGGGGAACCTCTTGGTGGGTCTGAAATCAAGTGGGGCGAATCTAAAAGCTGTGCAAATGGAAGAATTTGGGGAGGATGTTAGTTCGGGTCACCTGGTGGATCCGGGTTCTGGTCGGAACCCTGTGCTGGAGATTGAAAGGAATGGGAATGCAGCAAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTTCACTCCTGGGCCTAGCTATGAAAATTTATGA 618 0.5081 MQDPALFQPLKPHFPEQEQLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSANTKRASPSPAPEPDPTRVCPSPVVGGGGNFGSLLASGAHLGNLLVGLKSSGANLKAVQMEEFGEDVSSGHLVDPGSGRNPVLEIERNGNAASFLSMQNGDSSCWNGTNGWSNLAIFTPGPSYENL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00058 205 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 91 IPR045174 GO:0003700|GO:0006355
Vium6674g00058 205 MobiDBLite consensus disorder prediction 71 86 - -
Vium6674g00058 205 MobiDBLite consensus disorder prediction 64 102 - -
Vium6674g00058 205 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vium6674g00058 205 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Vium6674g00058 205 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00058 Vium-Chr6674 354184 355867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00058 11 124 C2C2-Dof Transcription Factor Family AT1G51700 57.778 3.67e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6674g00058 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00058 - - gmx:100798927 322.783