Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00048 ATGAATCGAGAACAGCAAAAGCGAGGGAAACAAGAAATATGTTCTGATGGAGCTGAAAAGGTCATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTAGTTGTACCTTCACAGAGTTCGGGCAGAAGATTATGGGGTTTTCCAAGATTTGCTGGTGATTGTGCCAGTGGTCATAAGAAATCTTCTTCAGGATCATCAAGTTCGGAACAGAAGTGTGATATCACTGACTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCATGTGGAGCAGTGGCTGCGGAAGCCAAGAAAGCCCAAGCCAATTGGGTCGTTTTAGACAAACAGCTCAAACATGAAGAAAAACAATGTATGGAAGAGCTGCAATGCAACATTGTGGTCATGAAGCGTTCACAACCTAAGGTACTCCGCTTGAATTTGGTTGGAAAAAAAAAGAAGGATCTTGAAGAATTATGTTCACTACCTTCTGAACAAGATCAGGTGCTTGGAAAACAAACTAAGAACAAGAGTGATTCTTTAAATTCCTTAAAAGGTCCAGTTGTCACTCCATCTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACTGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCAAGGAACTTCGCCATTTTTCATCTCTGAGATAAACAGCGAGTCCAAAAAAGAGGAAACTATAAAAGAAAATCCAGAACTTGATGATTCTATATCAGACACAGACAGTGAAAGCTTATCCACTTCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACCGATTTACTTCTGCATCAACGATCTTCTCAACCTAAGGAAGAAAGAACAGAGAGATCTCATAGTAGGAATCAATTGTCTACTACTAGAGCTTTGTTAGAAAAGTTCTCGAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTTGGATTTCAGTGGGAATGTACGAGAAGCAATAGCGTTATCTAGAAATACTCCGCTTGGTCCACCTCCCTTGTGTTCAATCTGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTTACCTATGCTGAATTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGTGTTCTACCAGATGGACAAGTTGTTGCTGTGAAGCAACATAAATTGGCCAGTTCTCAGGGTGACCTTGAATTCTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGTTTCTGTATAGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGAGACAACGAAAACCATTAGAATGGTCTGCCCGGCAAAAAGTTGCTGTTGGAGCTGCCCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGACCGAACAACATTCTTATCACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTGATCGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATTACTGAAAAGGCTGATGTTTATTCATTTGGTGTTGTATTAGTGGAACTTGTTACAGGGAGAAAGGCTGTGGATCTGAATAGGCCAAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCGGAACATGAGGTCTATTGCATGCTGCATGCTGCCTCATTGTGCATAAGGAGAGATCCTTATTCTAGACCTCGCATGTCACAGGTTCTGCGAATACTGGATGGTGACACGGTTATGGACCCAAATTATATTTCAACTCCCAGTTATGATGTGGGAAACCGGAGTGGTTGA 2094 0.4284 MNREQQKRGKQEICSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSSSGSSSSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGKKKKDLEELCSLPSEQDQVLGKQTKNKSDSLNSLKGPVVTPSSSPELGTPFTATEAGTSSVSSSDQGTSPFFISEINSESKKEETIKENPELDDSISDTDSESLSTSSASLRFQPWITDLLLHQRSSQPKEERTERSHSRNQLSTTRALLEKFSRLDREAEIEISTYKTDLDFSGNVREAIALSRNTPLGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILDGDTVMDPNYISTPSYDVGNRSG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00048 697 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Vium6674g00048 697 MobiDBLite consensus disorder prediction 197 256 - -
Vium6674g00048 697 MobiDBLite consensus disorder prediction 257 274 - -
Vium6674g00048 697 FunFam Dual-specific kinase DSK1-like 12 167 - -
Vium6674g00048 697 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vium6674g00048 697 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Vium6674g00048 697 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6674g00048 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Vium6674g00048 697 CDD STKc_IRAK 410 676 - -
Vium6674g00048 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Vium6674g00048 697 PANTHER OS01G0750732 PROTEIN 155 682 - -
Vium6674g00048 697 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Vium6674g00048 697 MobiDBLite consensus disorder prediction 197 288 - -
Vium6674g00048 697 Gene3D Transferase(Phosphotransferase) domain 1 480 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00048 Vium-Chr6674 299806 306221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00048 384 680 Trihelix Transcription Factor Family AT1G70460 53.642 5.47e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium6674g00048 PK_Tyr_Ser-Thr 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00048 - - gmx:100789216 1266.91