Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00047 ATGGAGGCCAAAGCGGACTCAACTCAAAACCCTACTCCAAGACACAAATGTTCGGCATGCTATAAACAATTCAAGAAGAAAGAGCATCTAATTGAGCACATGAAAACCTCAAACCATTCCGTCCATCAGCCTGCGTGTGGAGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGACTTTCTCTCAACGGGGCTGTCAACTTTGCTTAGTACTATTTGATAGTCCCGGGTCTCTCATTGCTCACAGAGAAACATGTTGCTTATCTGCCCCTACTCGTCTTGGAACTAAAGAACTGACCTATATAGATTCCCATTTTGAATGTCAAGATTCTTCCGATGAAAACCATGCTGGCAGGGGCCCTGGAGGAACAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATCAAGATGAGAACTTAATCTTTCATACGTATGTAAAACCTCAATTGCCTGTTACTAATTACAGATATGATATAACTGGGTTGACAGAAGAACATCTCAGAAATGCCATGCCCCTTAATGAAGTTAAAGAAAAGGTATGCAAAATACTATACAATGGAGAAAACCTTGGCAAAATTCGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTATATTGCTTGAATATGCATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTGTTTCTGTGATGAGACTATACAAGAGAATACGAGCTCAAATGCATCCAGAGGAAGAAGACCATGGAACATCGACTCCGAGTAACAGGATTGTCGGCGTGCATGATTGCTGGAGATCCAAGGAACTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCAAAATTGCCAACCTGA 1104 0.4266 MEAKADSTQNPTPRHKCSACYKQFKKKEHLIEHMKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVCSKTFSQRGCQLCLVLFDSPGSLIAHRETCCLSAPTRLGTKELTYIDSHFECQDSSDENHAGRGPGGTVAIDCEMVGGGSDGSLELCARVCLVDQDENLIFHTYVKPQLPVTNYRYDITGLTEEHLRNAMPLNEVKEKVCKILYNGENLGKIRLNGGKARLLVGHDLAHDLYCLNMHYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCVSVMRLYKRIRAQMHPEEEDHGTSTPSNRIVGVHDCWRSKELDNLTPDQLYAMSRSDYKCWCLDLRPKLPT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00047 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vium6674g00047 367 CDD REX4_like 140 304 IPR037431 GO:0006364|GO:0008408
Vium6674g00047 367 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vium6674g00047 367 Pfam Exonuclease 140 303 IPR013520 -
Vium6674g00047 367 SUPERFAMILY Ribonuclease H-like 140 306 IPR012337 -
Vium6674g00047 367 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 315 IPR047021 GO:0004527
Vium6674g00047 367 Gene3D - 138 320 IPR036397 GO:0003676
Vium6674g00047 367 SMART exoiiiendus 138 312 IPR013520 -
Vium6674g00047 367 Gene3D Classic Zinc Finger 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00047 Vium-Chr6674 294853 299024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00047 1 360 C2H2 Transcription Factor Family AT3G27970 52.222 1.13e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00047 K18327 - gmx:100788682 649.432