Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00046 ATGAAAACCTCAAACCATTCCGTCCATCAGCCTGCGTGTGGAGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGACTTTCTCTCAACGGGGCTGTCAACTTTGCTTAGTACTATTTGATAGTCCCGGGTCTCTCATTGCTCACAGAGAAACATGTTGCTTATCTGCCCCTACTCGTCTTGGAACTAAAGAACTGACCTATATAGATTCCCATTTTGAATGTCAAGATTCTTCCGATGAAAACCATGCTGGCAGGGGCCCTGGAGGAACAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATCAAGATGAGAACTTAATCTTTCATACGTATGTAAAACCTCAATTGCCTGTTACTAATTACAGATATGATATAACTGGGTTGACAGAAGAACATCTCAGAAATGCCATGCCCCTTAATGAAGTTAAAGAAAAGGTATGCAAAATACTATACAATGGAGAAAACCTTGGCAAAATTCGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTATATTGCTTGAATATGCATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTGTTTCTGTGATGAGACTATACAAGAGAATACGAGCTCAAATGCATCCAGAGGAAGAAGACCATGGAACATCGACTCCGAGTAACAGGATTGTCGGCGTGCATGATTGCTGGAGATCCAAGGAACTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCAAAATTGCCAACCTGA 1005 0.4269 MKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVCSKTFSQRGCQLCLVLFDSPGSLIAHRETCCLSAPTRLGTKELTYIDSHFECQDSSDENHAGRGPGGTVAIDCEMVGGGSDGSLELCARVCLVDQDENLIFHTYVKPQLPVTNYRYDITGLTEEHLRNAMPLNEVKEKVCKILYNGENLGKIRLNGGKARLLVGHDLAHDLYCLNMHYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCVSVMRLYKRIRAQMHPEEEDHGTSTPSNRIVGVHDCWRSKELDNLTPDQLYAMSRSDYKCWCLDLRPKLPT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00046 334 CDD REX4_like 107 271 IPR037431 GO:0006364|GO:0008408
Vium6674g00046 334 SMART exoiiiendus 105 279 IPR013520 -
Vium6674g00046 334 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 282 IPR047021 GO:0004527
Vium6674g00046 334 Pfam Exonuclease 107 270 IPR013520 -
Vium6674g00046 334 SUPERFAMILY Ribonuclease H-like 107 273 IPR012337 -
Vium6674g00046 334 Gene3D - 105 287 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00046 Vium-Chr6674 294853 299025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00046 1 327 C2H2 Transcription Factor Family AT3G27970 52.294 5.82e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00046 K18327 - gmx:100788682 594.349