Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00044 ATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTTTTTTCCCTTCAATTGTGTACATAGAAAAGGAAAGCCTGCATATGTATCCATCAGGATAGGCAAACAGAAGGCGGCGAAAACGACACGAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTCTGTGTGCTCATCCAGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCGTTTTGGGAAAATTCCACATGCAGGCCAAGCGGTTGAATGAAGAGAGTTTGATCAATGGATTGTTCCCTCTTCTCATGGAAAATGGAAAACCAAATCCACAACTGAAGTTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGAGAAAGATACTAAGCAATGGGGAGTTTCAAGGGCTTAGGGATGCTACTTTCCCACAAAGGTCCAACTGCGAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGTGGCGCTCCATTAAAGCTATGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCTAGGGAGATAAATCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGACGAAACATCTTTGCCTTTGATTAAGAACAAAGGTGTGATGAACACTCATGACGAGGAAGCTTTTGCCTACTTCAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTATGGACACCAGAACACCCTACTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGCCGCTATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGATTACCATGACTTCTACCAGACAAACATTGCAAAAGCTAGCCTCAATAAAGGAGGACCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCATGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGCGATCCTTCTCTTCTAGTTCCTGCCAACACTCTACAAAATCTCATTCCCACATACTCGAGCACTCCAACAGAAAGGAATTGGAAAGTCCAAGTATACAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGCTAACTGTGGAGAGAAGCATCCACGAAGCTTATGTTGAAGCTATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAGTATTTTGTTGGAGGGTGTCACTTGTGGCAAGAAGATAGGCACAGTGGATGCAGCAATCTGATTCCTGTTGAGATTGCACTGAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATTGGTTGATTGGAGAAGCAATAACAGAAAGTGGGGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGGGAAAAGAAGGAAAAGGAGGAGTTTCTTCCTCCACTTTCTCCCCATCCTGCAACACAATACTGGAATGCACAGAAGAACAGAAGGTTCCCGATTTATGTTCATTCAAAGGTGATGATAGTGGACGACATATACATATTAATAGGATCAGCCAATGTGAACCAACGATCCATGGATGGAGAAAGGGACACTGAGATTGCCATTGGGGCATACCAGTTTCAAGATGGAGTTGATCACCACGTAAACCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACGGGAAGTGCTGAGGAACTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGGTCAATAGGGGATCATATGTGGGAAATGTACAGCAGTGAAGAAATTGTAGACATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGACCCAGATGATGGCGGTGATCATTTTCCTGATACAAAATCTCCTGTGAGGGGGCAGAGATCAAAATTCTTAAACCCTGTCTTCACCACTTAA 2277 0.4335 MEEMSKFLIHGTIEATIFNATPYSPFFPFNCVHRKGKPAYVSIRIGKQKAAKTTRERERVWNQTFQILCAHPEDSTITITLKTSCFVLGKFHMQAKRLNEESLINGLFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWRKILSNGEFQGLRDATFPQRSNCEVKLYHDAHHSSTFHPPFDLCGAPLKLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKAEEGVAVRVMIWDDETSLPLIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITMDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAKASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLQNLIPTYSSTPTERNWKVQVYRSIDHVSASQLFRRLTVERSIHEAYVEAIRRADRFVYIENQYFVGGCHLWQEDRHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYWLIGEAITESGEPGHPRDYLNFFCLANREKKEKEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKVMIVDDIYILIGSANVNQRSMDGERDTEIAIGAYQFQDGVDHHVNRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPVRGQRSKFLNPVFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00044 758 PANTHER PHOSPHOLIPASE D 8 742 IPR015679 -
Vium6674g00044 758 Gene3D Endonuclease Chain A 446 656 - -
Vium6674g00044 758 Pfam C2 domain 39 110 IPR000008 -
Vium6674g00044 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Vium6674g00044 758 SUPERFAMILY Phospholipase D/nuclease 424 687 - -
Vium6674g00044 758 SUPERFAMILY Phospholipase D/nuclease 147 432 - -
Vium6674g00044 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Vium6674g00044 758 PIRSF PLD_plant 2 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium6674g00044 758 SMART pld_4 296 333 IPR001736 GO:0003824
Vium6674g00044 758 SMART pld_4 603 630 IPR001736 GO:0003824
Vium6674g00044 758 Gene3D Endonuclease Chain A 183 426 - -
Vium6674g00044 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 39 132 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00044 Vium-Chr6674 279841 283026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00044 26 758 Phospholipase D Gene Family (Wang group) AT1G55180 61.733 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00044 K01115 - gmx:100807431 1398.26