Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00033 ATGGAATTGCAGCTCATTTTCCTGCTAATTAAGCTACATTTTGTTACATGTACACCCCATCTTCATGAATATGCTGCAAGCTATTTGCACCATTCAAGAATCCGAAGCCCTTCAAGCATTGCATTCCCACCCACAGAGTCACCTACTAGAGTTCCTGCTAGTTCTACACTTCCACCTTCCAAGGCATTCCCCAAAAGGAAATGGACGCACAGTTCTATGGACTCTCCAAATCCACACCATAAGCATCACCATTCAAGAAGAAAGTTCAGCAACCAAGCTCCTGGAACAACCTTTTCAACCAACCCCCATACTCATCAAGGTCATCCTCCTGTCTTCAAATCACAACATTCATTCTCTTCACCAGTAAATGCACCCGCACAAGCTCCTGCACCAGCACCAACACTTCTATCACAGCACTTGAATGTACCCTATACTTCACCCAGAATTTCACCTCAAGGTTCATCAGTGAAGAAGACAAGAACTCCACCAGCAGCATATGCTTTGGTTCTACCATCTCCACCGCCTAACAAAGGTTGTATGTCACTGACATGCTCCGAGCCCTTGACATATACACTTCCTGGATCACCTTGTGGTTGTGTTTGGCCACTCCAAGTTAAACTACGCATCAGCATTGCAATAAACAAGTTTTTTCCTTCTGTTTCAAAGCTGGCCAAAGAAATTTCAGCTAGTGTTTTTTTGAACCGTAATCAAGTACGCATTGTGGGAGCCGATGCAACTACTCAGCAGGTCGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAATTTGATGATACAACAGCTCTTTTAATATATAAGAAATTCTGGCAGAGAGAGATACTCAGTGATTCTTCTACCTTCGGTTCCTATGAAGTGCTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAAATGTTTACGGTATAGATGTTGAACCATACACTGGTCACGACAACAATGTAACAATAATAAAACCTTTAGGAGTAAATGTCTCAAGGAAGCAAAAAGAAGGGAGTGGTGGAAGAATGCTTATTATGATCATCCTTTCATCTTTGGCCGCCTTCGTTCTATTCATTGGACTTGAATGGCTTTTTCTCTTAAAATGTGGTTCCAGCACTCTTGAACCTGGACATATTCCAGATGCAAAAATGTCATCATCTTCAAAACGATCAGGAACTGCCAGTGTTAGGTCATTGACTTATGCGAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAATCTATGCAGGATCAGCTAAAATATTTTCTTTGAACGAAATCGAGAAAGCAACAAATAACTTCAATTCTTCAAGCATACTTGGAGAAGGTGGCTTCGGTCTTGTTTATAAGGGTGACTTAAATGATGGCAGAGAGGTGGCTGTGAAGATTCTCAAAAGGGATGACCAGCATGGTGACCATGAATTCTTTGCAGAGTCAGAGATGCTTAGCTGCTTGCACCATAGGAATTTAGTTAAATTGATAGGTATATGCACAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGCAGCGTGGAATCCCACTTACATGGTGTGGACAAAGAAACCGAACCACTTGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTAGAGGATTAGCCTATCTGCATGAAGATTGTAATCCATGTGTCATACACAGAGACTTCAAATCCAGCAACATCTTATTGGAATACGATTTTGTACCCAAAGTTTCAGATTTTGGCTTGGCTAGAACAACATTGAACGAGGGAAACAAGCCCATTTCAACTCATGTTATTGGTACATTTGGCTACGTAGCTCCTGAATATGCAATGACAGGACATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTGCTAAGTGGAAGAAAGCCTGTGGATTTGTCACAGCCAACGGGCCAAGAAAACCTTGTTGCTTGGGCTCGTCCACTTCTTACAAGTAAGGAGGGTTTGCAGAAGCTCATAGACCCAATTATGAAGGATAGTGTTTCCATTGATACCATTGTAAAGGTTGCAGCAATTGCATCCATGTGCGTGCAGTCAGAAGTCACTCAGCGTCCTTTTATGGGTGAAGTTGTTCAGGCCTTGACATTGGTATGCAGTGAGTTTGAGGAAACAAGAGTTCTGTAA 2190 0.4242 MELQLIFLLIKLHFVTCTPHLHEYAASYLHHSRIRSPSSIAFPPTESPTRVPASSTLPPSKAFPKRKWTHSSMDSPNPHHKHHHSRRKFSNQAPGTTFSTNPHTHQGHPPVFKSQHSFSSPVNAPAQAPAPAPTLLSQHLNVPYTSPRISPQGSSVKKTRTPPAAYALVLPSPPPNKGCMSLTCSEPLTYTLPGSPCGCVWPLQVKLRISIAINKFFPSVSKLAKEISASVFLNRNQVRIVGADATTQQVEKTTVLINLVPQGVKFDDTTALLIYKKFWQREILSDSSTFGSYEVLYVHYPGLPPSPPSNVYGIDVEPYTGHDNNVTIIKPLGVNVSRKQKEGSGGRMLIMIILSSLAAFVLFIGLEWLFLLKCGSSTLEPGHIPDAKMSSSSKRSGTASVRSLTYASMPGSRSMSFSSGTIIYAGSAKIFSLNEIEKATNNFNSSSILGEGGFGLVYKGDLNDGREVAVKILKRDDQHGDHEFFAESEMLSCLHHRNLVKLIGICTEKQTRCLVYELVPNGSVESHLHGVDKETEPLDWNARMKIALGAARGLAYLHEDCNPCVIHRDFKSSNILLEYDFVPKVSDFGLARTTLNEGNKPISTHVIGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDLSQPTGQENLVAWARPLLTSKEGLQKLIDPIMKDSVSIDTIVKVAAIASMCVQSEVTQRPFMGEVVQALTLVCSEFEETRVL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00033 729 ProSiteProfiles Protein kinase domain profile. 443 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6674g00033 729 PANTHER OS01G0750732 PROTEIN 171 724 - -
Vium6674g00033 729 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Vium6674g00033 729 Gene3D Transferase(Phosphotransferase) domain 1 519 727 - -
Vium6674g00033 729 FunFam Receptor-like serine/threonine-protein kinase ALE2 519 728 - -
Vium6674g00033 729 FunFam receptor-like serine/threonine-protein kinase ALE2 416 518 - -
Vium6674g00033 729 Pfam Protein tyrosine and serine/threonine kinase 446 716 IPR001245 GO:0004672|GO:0006468
Vium6674g00033 729 CDD STKc_IRAK 449 717 - -
Vium6674g00033 729 MobiDBLite consensus disorder prediction 90 124 - -
Vium6674g00033 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Vium6674g00033 729 Gene3D Phosphorylase Kinase; domain 1 416 518 - -
Vium6674g00033 729 MobiDBLite consensus disorder prediction 40 131 - -
Vium6674g00033 729 MobiDBLite consensus disorder prediction 40 56 - -
Vium6674g00033 729 SUPERFAMILY Protein kinase-like (PK-like) 423 717 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00033 Vium-Chr6674 181077 185293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00033 176 729 Receptor kinase-like Gene Family AT5G56890 60.638 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium6674g00033 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00033 - - gmx:100798578 1176.39