Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00029 ATGCAACAATGCATCATTCATTCATTTCCATTCTCCATGGCAACCAACCAACTCAAAGAACCACCCAAAAGGCTCCAATACCCACTCGACTCTTCCTCCTACAAGCTCCTCAACGAGATCGGCGCCGGCGTCAGTGCCGTCGTCTACAAAGCCATCTGTATCCCCATGAACTCCGCCGCGGTCGCAATCAAATCCATAGACCTCGACCGTTCCCGCCCCGACTTGGACGACGTTCGTCGCGAGGCCAAAACTCTGTCCCTCCTTTCACACCCTAACATCCTCAAAGCACACTGCTCTTTCACCGTCGACCGCCGCCTCTGGGTGGTCATGCCCTTCATGGCCGCAGGATCTCTCCAATCCATCATCTCTCACTCCCACCCCAACGGCTTAACCGAGCCCTGCATCGCGGTGGTTCTTAGAGACACCCTCAATGCCCTCTCCTACCTCCACGGCCAGGGCCACCTCCACCGTGACATAAAAGCCGGGAATATCCTCGTTGACACAAACGGACAGGTAAAGCTCGCGGATTTCGGCGTGTCGGCTTCCATCTACGAGTCCTCCACGTGTTCCTCTCTCAAGTTCACCGATGTTGCAGGCACGCCGTATTGGATGGCTCCGGAGGTGATTCACTCGCATACAGGATACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACCGCTTTGGAGCTCGCGCATGGAAGGCCTCCTCTCTCCCATCTTCCACCTTCAAAGTCCATGATGCTCAAGATCACCAAGCGGTTTCGGTTCTCCGATTTGGATAAATATAGAAAGGGGAATGGGAATAAGTTCTCCAAGGCGTTCAAGGACATGGTGGCTTCTTGTCTGGACCAAGATCCTTCCAAAAGACCCACTGCTGATAAGTTGCTGAAACACCCCTTCTTTAAAAACTGCAAAGGAACTGATTTTCTGGTCAAGAACGTGCTTTTAGGGTTACCCAGTGTGGAGAAAAGGTACAAGGAGAGCAAGGTTAACGAACATGCAGATGGGGGAGGCCACGATGATGATGATGATGATGATGATGAAGACCCCGCCATGCTGGTGAAGGAGAGAAGGATTAGTGGATGGAACTTCAACCAAGACGGGTTGGAGCTTGATCCTGTGTTTCCAAACGATGATGCGGGGGCTAAAAAGGCTGAGCTTGGAGGGGAAAGTGTTATCAGAAAAATGGAGGAGCTTGTCAATGTTGGTGGAAATGAAGCAGGAAGTGGTGGTGGTGGTGTGAAGAAGAGGGAGAAGATGTTGACGACTTTGAATATTCTGAAAGGGAGCTTGGAACAAGAGCTGTTGGAAGTGAAGTTTCTTGTGAATACAATAAGAGGAGAGGAGGAGAGTGATCGTGATCAAGTGGCTGCTGCTGCTTCTGCTGATCATAGTGAGGAGAAGGAGATTTCTAGGCTCAGGGCTGCACTGGAAAATGAGAGGAAGAAGAACTTGCAGCTGGAGTTGCAGCTCCACAACTGCAAGATTCAACTTTCTTCTCTCAATATTTCCAACTAA 1521 0.5049 MQQCIIHSFPFSMATNQLKEPPKRLQYPLDSSSYKLLNEIGAGVSAVVYKAICIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSHPNGLTEPCIAVVLRDTLNALSYLHGQGHLHRDIKAGNILVDTNGQVKLADFGVSASIYESSTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDLDKYRKGNGNKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLLGLPSVEKRYKESKVNEHADGGGHDDDDDDDDEDPAMLVKERRISGWNFNQDGLELDPVFPNDDAGAKKAELGGESVIRKMEELVNVGGNEAGSGGGGVKKREKMLTTLNILKGSLEQELLEVKFLVNTIRGEEESDRDQVAAAASADHSEEKEISRLRAALENERKKNLQLELQLHNCKIQLSSLNISN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00029 506 Pfam Protein kinase domain 34 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6674g00029 506 MobiDBLite consensus disorder prediction 330 350 - -
Vium6674g00029 506 Coils Coil 471 498 - -
Vium6674g00029 506 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 26 484 IPR047173 GO:0043539
Vium6674g00029 506 FunFam Serine/threonine-protein kinase BLUS1 23 112 - -
Vium6674g00029 506 Gene3D Transferase(Phosphotransferase) domain 1 116 348 - -
Vium6674g00029 506 Gene3D Phosphorylase Kinase; domain 1 23 112 - -
Vium6674g00029 506 SMART serkin_6 34 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6674g00029 506 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Vium6674g00029 506 ProSiteProfiles Protein kinase domain profile. 34 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6674g00029 506 SUPERFAMILY Protein kinase-like (PK-like) 22 307 IPR011009 -
Vium6674g00029 506 FunFam Serine/threonine-protein kinase BLUS1 116 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00029 Vium-Chr6674 159555 161229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00029 24 487 MAP Kinase Kinase Kinase Kinase AT4G14480 54.675 2.22e-179 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vium6674g00029 Pkinase 5.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00029 K08835 - gmx:100820227 743.806