Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00028 ATGATCAAGCCTCTTGACCATGTTAACAGAAACTCAGCCATCGACGCCATTATCTTTGAGTCAGATATGAGAGCCAAAGACCCTGTTGGGGGCTGCTTAAGAACCATTCTATACTTGCAATCTGTCATCGCTTCTGCAGAATCTGAACTCCAATTTCTCCTTCAACACCTTGCCTTCTTCAGAGCGCAAGCTCTTGATTCCATCGCCACACCACAACCACCACCACCACCACCTTCCTCCTCCCACGACCCTTATCATCAAGGAATGTCACTTCAAGAATCAAAAGATCCGTCACAACTTCACCCACAAGATCTTGGAAATGATCCCTCACAAATTCAACAACAAGAACAGCCAAAAGATTCGTGCTTTAATTACAATGCATTGCAAGAAGATATGAACGTGTCGGACATTGACAGCTTAGTACCGTTCTCTCCGTGGCTATCGCCGCTGGATGACATCAGCCAATATCAAGATCCCTGA 480 0.4562 MIKPLDHVNRNSAIDAIIFESDMRAKDPVGGCLRTILYLQSVIASAESELQFLLQHLAFFRAQALDSIATPQPPPPPPSSSHDPYHQGMSLQESKDPSQLHPQDLGNDPSQIQQQEQPKDSCFNYNALQEDMNVSDIDSLVPFSPWLSPLDDISQYQDP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00028 159 MobiDBLite consensus disorder prediction 83 124 - -
Vium6674g00028 159 MobiDBLite consensus disorder prediction 67 124 - -
Vium6674g00028 159 Pfam Lateral organ boundaries (LOB) domain 1 52 IPR004883 -
Vium6674g00028 159 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00028 1 132 AS2 family AT3G13850 34.483 9.31e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium6674g00028 LOB 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00028 - - vum:124843860 308.531