Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00026 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCATCTTCAGGCAATAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACGCAGGCTCCAACAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCGTCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAACTTGCCATGGAAGCTGAAGCAGAGAACGAGCAAGGAGATAAGAAAGAAGGTTTATGTCTGCCCAGAAGCAAGTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAAACCTGTGGCACAAGAGAGTACAGATGTGACTGCGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATGGACATTGGCATTGGCATTCCCAGCAACTCAGGTACAACGTCAACAACACCTCACAAAGCACCTGCAGCAGGAGTAGTGATCCCTTCATCCTCTCATCATCATCATCATCATCATCATCATCATCATGATGAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATGCCCCCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCCTCCTCCTCCTCCTCATTCTTCTCTCAGCAGGATCATGTGAGCAGTCTCCATGAAAACCCTAACCCTAGAGGTGATGGTGGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCACCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGAAGCCCAAATGGGAGCTACCATGAGCAAAACTGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTTTGAATTTGTCCTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGGTGTTGGTGTTGGTGTTGGTGTTTCTTCATCACTCCTTCACCATGTTATTAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTTGAGGACCCTTTCAATGGTGCTGTGACGAAAACAACCGCCGCTGATGACCGTGCCGGTGGTGGCGGCGGCGGCGGAGGAGGAGGAAATTATAATGAGGCCATGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATTCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1491 0.4963 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPTKKKRNLPGNPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGMDIGIGIPSNSGTTSTTPHKAPAAGVVIPSSSHHHHHHHHHHHDEDIHGNNFPLKKEQQGFMPPWLGQPPSTIDLSSSSSSFFSQQDHVSSLHENPNPRGDGGGGGPTLPPYPTAPSPPHMSATALLQKEAQMGATMSKTGSMIRTHQQAHVSADSLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPGVGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFNGAVTKTTAADDRAGGGGGGGGGGNYNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00026 496 Gene3D Classic Zinc Finger 125 205 - -
Vium6674g00026 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 485 IPR031140 -
Vium6674g00026 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vium6674g00026 496 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 1 54 - -
Vium6674g00026 496 SMART c2h2final6 71 93 IPR013087 -
Vium6674g00026 496 SMART c2h2final6 112 142 IPR013087 -
Vium6674g00026 496 SMART c2h2final6 147 167 IPR013087 -
Vium6674g00026 496 FunFam protein indeterminate-domain 12-like 50 118 - -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 1 44 - -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 217 329 - -
Vium6674g00026 496 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 341 387 - -
Vium6674g00026 496 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Vium6674g00026 496 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vium6674g00026 496 Gene3D Classic Zinc Finger 50 121 - -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 278 301 - -
Vium6674g00026 496 MobiDBLite consensus disorder prediction 341 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00026 Vium-Chr6674 124211 127537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00026 1 485 IDZ Gene Family AT1G55110 46.838 2.77e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6674g00026 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00026 K25870 - gmx:100820609 647.121