Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00025 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCATCTTCAGGCAATAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACGCAGGCTCCAACAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCGTCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAACTTGCCATGGAAGCTGAAGCAGAGAACGAGCAAGGAGATAAGAAAGAAGGTTTATGTCTGCCCAGAAGCAAGTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAAACCTGTGGCACAAGAGAGTACAGATGTGACTGCGGAACTCTCTTCTCAAGAATCAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATGGACATTGGCATTGGCATTCCCAGCAACTCAGGTACAACGTCAACAACACCTCACAAAGCACCTGCAGCAGGAGTAGTGATCCCTTCATCCTCTCATCATCATCATCATCATCATCATCATCATCATGATGAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATGCCCCCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCCTCCTCCTCCTCCTCATTCTTCTCTCAGCAGGATCATGTGAGCAGTCTCCATGAAAACCCTAACCCTAGAGGTGATGGTGGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCACCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGAAGCCCAAATGGGAGCTACCATGAGCAAAACTGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTTTGAATTTGTCCTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGGTGTTGGTGTTGGTGTTGGTGTTTCTTCATCACTCCTTCACCATGTTATTAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTTGAGGACCCTTTCAATGGTGCTGTGACGAAAACAACCGCCGCTGATGACCGTGCCGGTGGTGGCGGCGGCGGCGGAGGAGGAGGAAATTATAATGAGGCCATGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATTCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1497 0.4957 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPTKKKRNLPGNPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRIRRDSFITHRAFCDALAEESARSVTGMDIGIGIPSNSGTTSTTPHKAPAAGVVIPSSSHHHHHHHHHHHDEDIHGNNFPLKKEQQGFMPPWLGQPPSTIDLSSSSSSFFSQQDHVSSLHENPNPRGDGGGGGPTLPPYPTAPSPPHMSATALLQKEAQMGATMSKTGSMIRTHQQAHVSADSLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPGVGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFNGAVTKTTAADDRAGGGGGGGGGGNYNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00025 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 343 389 - -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 1 54 - -
Vium6674g00025 498 SMART c2h2final6 71 93 IPR013087 -
Vium6674g00025 498 SMART c2h2final6 112 142 IPR013087 -
Vium6674g00025 498 SMART c2h2final6 147 167 IPR013087 -
Vium6674g00025 498 FunFam protein indeterminate-domain 12-like 50 118 - -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 1 44 - -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 280 303 - -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 343 388 - -
Vium6674g00025 498 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vium6674g00025 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 487 IPR031140 -
Vium6674g00025 498 MobiDBLite consensus disorder prediction 219 331 - -
Vium6674g00025 498 FunFam protein indeterminate-domain 5, chloroplastic-like 125 206 - -
Vium6674g00025 498 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vium6674g00025 498 Gene3D Classic Zinc Finger 68 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00025 Vium-Chr6674 124206 127537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00025 1 487 IDZ Gene Family AT1G55110 46.654 2.62e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6674g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00025 K25870 - gmx:100820609 642.114