Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00017 ATGGAGTATTTTCCTTCTCAACATGGCTTGCAATTCGAATCTGAACCTGGCGCCTACAATGGTGATGCGAATGACGAGCTCGCAAAACCCTCCCCCAATCCTCGTGATTCGTCTTCAGGGAAACTTTTCGTTGGGGGCATTTCGTGGGAAACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCGGTAATAATGACAAATAAACTTTCTGGAAGGCCACGCGGCTTTGGCTTTGTAACATTTGCCGATTCAGCTGTAGCAGATGATGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGAATTGGAGTACTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCACTGACGATGAGTTGAGGGGATACTTTTCACCTTATGGCGATGTTGTTGAGTGCCAAATCATGTTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTAACTTTTGACAACGAAGATTCAGTCGAAAAGGTGTTTTCAGCGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACATCAGTAGTACCTCACGAAAGTCATATGGTGGTTTTAGCAATGGAATGGATGGATATGGTGGGAATAGCTCAAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAACGGTGCATATGGCTACTTTGAGGGAAGCTTTGGCGGAAGTGCTGCTACTGTTTATGGTGGTTATTGTGGATATGGTTATGGTTTTGGATATGGTGGACCGATGTATTGCTATGGCGGCTATGGACTGAATTCTTATGGTAATCCTGGGGTTTATGGTGGCGGCACTATCTCCCATGGAGATGGTAATGCATATGGAAGAAACGTTAGTTTCAACCGCAGCAGTGGATATGATGGTGGGAAAGGGGCTGAGAAGGACGATGGTCCTACAACTGGAAGGTACCATCCTTACTGGAAATGA 1065 0.4376 MEYFPSQHGLQFESEPGAYNGDANDELAKPSPNPRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADDVLAQEHTIDGRVVEVKRTVPREDMEGIGVLKTKKIFVGGIPQLFTDDELRGYFSPYGDVVECQIMLDHNTGRSRGFGFVTFDNEDSVEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDHISSTSRKSYGGFSNGMDGYGGNSSRNRNHGKRGGQYTDSGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSYGNPGVYGGGTISHGDGNAYGRNVSFNRSSGYDGGKGAEKDDGPTTGRYHPYWK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00017 354 Gene3D - 38 121 IPR012677 -
Vium6674g00017 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 20 353 - -
Vium6674g00017 354 SUPERFAMILY RNA-binding domain, RBD 30 120 IPR035979 GO:0003676
Vium6674g00017 354 Gene3D - 125 265 IPR012677 -
Vium6674g00017 354 MobiDBLite consensus disorder prediction 331 354 - -
Vium6674g00017 354 MobiDBLite consensus disorder prediction 216 249 - -
Vium6674g00017 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 120 - -
Vium6674g00017 354 SMART rrm1_1 130 203 IPR000504 GO:0003723
Vium6674g00017 354 SMART rrm1_1 41 112 IPR000504 GO:0003723
Vium6674g00017 354 CDD RRM1_hnRNPA_hnRNPD_like 42 112 - -
Vium6674g00017 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Vium6674g00017 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Vium6674g00017 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Vium6674g00017 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Vium6674g00017 354 MobiDBLite consensus disorder prediction 202 249 - -
Vium6674g00017 354 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 121 257 - -
Vium6674g00017 354 SUPERFAMILY RNA-binding domain, RBD 127 236 IPR035979 GO:0003676
Vium6674g00017 354 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00017 Vium-Chr6674 78036 81513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00017 42 227 Eukaryotic Initiation Factors Gene Family AT1G71770 28.293 3.49e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00017 K12741 - gmx:100818080 571.237