Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00012 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCACTCATTCCTTTTCGAAAGACCTCAACTTCAACAACTGATCAAGAGAAGGGTGGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGAGGGCTTCTTCGGAAGGGTCCACCGTGAAGAAAGTTGGTGAAGCTGCCGTACCTGATTCTTCCTTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGTATTCAGGCTGTGTTTCGAGCTTTCTTGGCTAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGTCGGTTAGTCAGAAAGCAAGCAGCCGTCACTCTGAGGTGTATGCAGGCTCTTGTTAGAGTTCAGGCTCATGTGAGGGCAAGGAATGTTAGGAATTCTCCTGAAGGGAAAGCCGTGCAGAAATTACTTGATGAGTATCGCAACCTAGATGATCCTTTTAAGCAAATTGAGGAAGGATGGTGTGACATTCCTGGAACCGTGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCTATCAAGAGGGATAGAGCAATGGCATACTCTCTGTCCACACAGTCAAGACTGGTTGCCAGTCCAAATCCTAAAGCCAATAAGTTATTGACTCCTCTCAAGCAGCACAACCTAAGCAACAAGAGCTTAGGATGTAGCTTGTTAGAACGCTGGATGGAGGCCAAGCCTTGGGAGAGTCCAAACTACAGGAAGATTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCAGCAGTTAAACCTCTAATGACTAGCCAATCCACTCCATCATCTTCGGCCATAAGCTCTGAATACATGTGTGATGATAGTCCTGTGTCAACTTCTTATACAGCTGGATCTCCATCTTTTCCGTCCACCAATACTGTTTTGATGGAAGCAACAGAGGAAAGAGAGGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCCCAGAATTCAAAGAGTCTTGTGATGGAGGAGTGTGTGTCTCACAGCACAACCACAGGTTTGATGAATGGAGATTTTAGAAGCAGTTCTAATTCTGACCTTTCAGTTAACATATGGAAGGATTCTTGTGCAACACCTCTGAGGGCAAGTTATCAAAAACGACAAATTGGGATATGA 1236 0.4506 MGASGKWFKSLIPFRKTSTSTTDQEKGGENKSKKKWKLWRASSEGSTVKKVGEAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQAHVRARNVRNSPEGKAVQKLLDEYRNLDDPFKQIEEGWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLVASPNPKANKLLTPLKQHNLSNKSLGCSLLERWMEAKPWESPNYRKIEDLVPAFQSRKNGVTSRISAVKPLMTSQSTPSSSAISSEYMCDDSPVSTSYTAGSPSFPSTNTVLMEATEEREVHQPSYMNLTESTKAKLKTCRSSSQNSKSLVMEECVSHSTTTGLMNGDFRSSSNSDLSVNIWKDSCATPLRASYQKRQIGI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00012 411 PANTHER IQ-DOMAIN 5-RELATED 1 374 - -
Vium6674g00012 411 MobiDBLite consensus disorder prediction 17 37 - -
Vium6674g00012 411 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Vium6674g00012 411 Pfam IQ calmodulin-binding motif 102 119 IPR000048 GO:0005515
Vium6674g00012 411 Pfam IQ calmodulin-binding motif 80 99 IPR000048 GO:0005515
Vium6674g00012 411 ProSiteProfiles IQ motif profile. 78 106 IPR000048 GO:0005515
Vium6674g00012 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 120 IPR027417 -
Vium6674g00012 411 Gene3D - 76 127 - -
Vium6674g00012 411 SMART iq_5 77 99 IPR000048 GO:0005515
Vium6674g00012 411 SMART iq_5 100 121 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00012 Vium-Chr6674 60030 62510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00012 1 394 IQD Protein Family AT1G72670 47.086 2.22e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00012 - - gmx:100788715 630.172