Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00011 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCACTCATTCCTTTTCGAAAGACCTCAACTTCAACAACTGATCAAGGTGGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGAGGGCTTCTTCGGAAGGGTCCACCGTGAAGAAAGTTGGTGAAGCTGCCGTACCTGATTCTTCCTTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGTATTCAGGCTGTGTTTCGAGCTTTCTTGGCTAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGTCGGTTAGTCAGAAAGCAAGCAGCCGTCACTCTGAGGTGTATGCAGGCTCTTGTTAGAGTTCAGGCTCATGTGAGGGCAAGGAATGTTAGGAATTCTCCTGAAGGGAAAGCCGTGCAGAAATTACTTGATGAGTATCGCAACCTAGATGATCCTTTTAAGCAAATTGAGGAAGGATGGTGTGACATTCCTGGAACCGTGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCTATCAAGAGGGATAGAGCAATGGCATACTCTCTGTCCACACAGCAGTCAAGACTGGTTGCCAGTCCAAATCCTAAAGCCAATAAGTTATTGACTCCTCTCAAGCAGCACAACCTAAGCAACAAGAGCTTAGGATGTAGCTTGTTAGAACGCTGGATGGAGGCCAAGCCTTGGGAGAGTCCAAACTACAGGAAGATTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCAGCAGTTAAACCTCTAATGACTAGCCAATCCACTCCATCATCTTCGGCCATAAGCTCTGAATACATGTGTGATGATAGTCCTGTGTCAACTTCTTATACAGCTGGATCTCCATCTTTTCCGTCCACCAATACTGTTTTGATGGAAGCAACAGAGGAAAGAGAGGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCCCAGAATTCAAAGAGTCTTGTGATGGAGGAGTGTGTGTCTCACAGCACAACCACAGGTTTGATGAATGGAGATTTTAGAAGCAGTTCTAATTCTGACCTTTCAGTTAACATATGGAAGGATTCTTGTGCAACACCTCTGAGGGCAAGTTATCAAAAACGACAAATTGGGATATGA 1233 0.4509 MGASGKWFKSLIPFRKTSTSTTDQGGENKSKKKWKLWRASSEGSTVKKVGEAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQAHVRARNVRNSPEGKAVQKLLDEYRNLDDPFKQIEEGWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQQSRLVASPNPKANKLLTPLKQHNLSNKSLGCSLLERWMEAKPWESPNYRKIEDLVPAFQSRKNGVTSRISAVKPLMTSQSTPSSSAISSEYMCDDSPVSTSYTAGSPSFPSTNTVLMEATEEREVHQPSYMNLTESTKAKLKTCRSSSQNSKSLVMEECVSHSTTTGLMNGDFRSSSNSDLSVNIWKDSCATPLRASYQKRQIGI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00011 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 118 IPR027417 -
Vium6674g00011 410 Gene3D - 74 125 - -
Vium6674g00011 410 SMART iq_5 98 119 IPR000048 GO:0005515
Vium6674g00011 410 SMART iq_5 75 97 IPR000048 GO:0005515
Vium6674g00011 410 PANTHER IQ-DOMAIN 5-RELATED 1 373 - -
Vium6674g00011 410 Pfam IQ calmodulin-binding motif 100 117 IPR000048 GO:0005515
Vium6674g00011 410 Pfam IQ calmodulin-binding motif 78 97 IPR000048 GO:0005515
Vium6674g00011 410 ProSiteProfiles IQ motif profile. 76 104 IPR000048 GO:0005515
Vium6674g00011 410 ProSiteProfiles IQ motif profile. 100 127 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00011 Vium-Chr6674 60030 62510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00011 1 390 IQD Protein Family AT2G26180 44.819 2.99e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00011 - - gmx:100788715 632.869