Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00006 ATGCAAGATAGTCCCGTGGTTGAGTCAGCCAAGATTAGCAATGGGGATGCCCTAATTGATGGAGCACAGAGCATGACTAACGAAGATGAGATGTTGGATGTAGAACACGTTTTAAGGTTTGAGAATGAGATAGATGAAATACAGGAGTCTCTGTTACCATGCTTTGAGCAATTTCTTATGTGGCCGCCTAATGATTGTGTCACAATTGAGTGGGTTCAGGATGTGATGGTCATCCTTGAGCAGGCCTCACAGAAGATGTTGCCATCGGAATTCTGTCATGTTGTACCCACCCTTTTGGTGGACAAATTGACAGATGCTGCTTGCAGTATTTTGTGTAAAGAACCAAACTGTGTGGAGATCAATTGCGAAGGAGAAGATTCAAGAGTAATCGTAGTTGGCGCTATTCACGGGCAGTTTCATGATTTAATGTTTCTTTTCAAGCATGAAGGAGTGCCCTCTGAGAACCAGATTTACGTTTTTAATGGAAATTATGTAGATAAAGGAGCTTGGGGAATTGAAGTATTTTTGGTCTTACTGGCTTGGAAGGTATTGATGCCTCACAGAGTATTTCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCGAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGATGATGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGCATACATGCAGCCCCTTCACAGAGACCAAAACGGAATAAAACACATAGAGTGGATCTTGGCTCTTTAGCCGAGTTATTTGAAGTTAAAAGATCCTGTATAGATTGTCCTTATGAAGGTCCTAACATATTGTTGAGTGATGTTCTCTGGTCAAGACCATCAAACAGGTATGGTCTGAGGGATAATACAGGCCATAAGTTAGGTTTATGGTGGGGTCCTGATTGCACTGAGGAATTTCTAAAGAACCACAGTTTAAAGCTGATTATCAGATCACATGACGAACCCGATTCAAGGGCTGGTAAAGATGATGATCTTGGGAATATGCTGAGAGGATACAGCATAGATCATGATGGAGAATCGGGAAAACTTTGTACACTTTTTAGTGCTCCAGACTATCCACAGTTTGGTAAAAGGAGATGTAACAATAAGGGGGCATATGCCGTATTGAAGTTTCCTGATTTTGCCAGTCCTTCCTTTCACTCATTCAAAGGGACAGAAAGACCAATGGTGGATCCCTATGTTGATTTTGGTGCTAATAACATTGATTCGAGTAAACTAGACTCTTCTCAAAGTGCTTCAACCTCTACCCTTTCTGCTTCTGAAAGATTTTATCCAGAAAGGATGAGACCTGAGTTTGACTTTGGGGCATTAGGTATATACAATGCCCCATGTTGGAGTGTTGAACTTCCTGATGGATCAGGTGGCACTCAAGTTGTGGAGGTTCCAAGGGCATCACTGGTTGAAGGGTTACCTCTGCCTTCAAACATACAGGAGCCACACAAGGCTGCTTATGAGTATTTGTTTGAGCTAGTTGCTGGCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCTGCTTTGAGAAGTAGAGCTAGGAAAAGAAAGGGTCAGGGATAG 1668 0.4215 MQDSPVVESAKISNGDALIDGAQSMTNEDEMLDVEHVLRFENEIDEIQESLLPCFEQFLMWPPNDCVTIEWVQDVMVILEQASQKMLPSEFCHVVPTLLVDKLTDAACSILCKEPNCVEINCEGEDSRVIVVGAIHGQFHDLMFLFKHEGVPSENQIYVFNGNYVDKGAWGIEVFLVLLAWKVLMPHRVFLLRGNHESRYCTARYGFKKEVWAKYGDQGDDVYNKFLECFKELPLASVIANCVYTTHGGLFRSIHAAPSQRPKRNKTHRVDLGSLAELFEVKRSCIDCPYEGPNILLSDVLWSRPSNRYGLRDNTGHKLGLWWGPDCTEEFLKNHSLKLIIRSHDEPDSRAGKDDDLGNMLRGYSIDHDGESGKLCTLFSAPDYPQFGKRRCNNKGAYAVLKFPDFASPSFHSFKGTERPMVDPYVDFGANNIDSSKLDSSQSASTSTLSASERFYPERMRPEFDFGALGIYNAPCWSVELPDGSGGTQVVEVPRASLVEGLPLPSNIQEPHKAAYEYLFELVAGLKHMIVTRETENRARVSALRSRARKRKGQG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00006 555 Pfam Calcineurin-like phosphoesterase 128 345 IPR004843 GO:0016787
Vium6674g00006 555 Gene3D - 67 454 IPR029052 -
Vium6674g00006 555 SMART pp2a_7 95 418 IPR006186 GO:0016787
Vium6674g00006 555 SUPERFAMILY Metallo-dependent phosphatases 91 424 IPR029052 -
Vium6674g00006 555 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 60 539 - -
Vium6674g00006 555 ProSitePatterns Serine/threonine specific protein phosphatases signature. 192 197 IPR006186 GO:0016787
Vium6674g00006 555 PRINTS Serine/threonine phosphatase family signature 228 254 IPR006186 GO:0016787
Vium6674g00006 555 PRINTS Serine/threonine phosphatase family signature 374 390 IPR006186 GO:0016787
Vium6674g00006 555 PRINTS Serine/threonine phosphatase family signature 128 155 IPR006186 GO:0016787
Vium6674g00006 555 PRINTS Serine/threonine phosphatase family signature 158 185 IPR006186 GO:0016787
Vium6674g00006 555 PRINTS Serine/threonine phosphatase family signature 191 215 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00006 Vium-Chr6674 30811 36150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00006 59 339 Calmodulin-binding Proteins AT5G63870 51.546 6.36e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00006 K04460 - gmx:100779241 985.326