Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00005 ATGTCATCACTGCCTTGCGCTACAGCATTGAGAAAATGTTTGCAGGTCTGTTCATCCAGGGATATCATTCAGATATTAAGTAGAATGTCCTTTGAAGGTTTGGATGACCAAAGGATGCATTTAGTGACGAGGATGAAAGAAATTGCACATGGGGTTATTGATAAACAACCTCGAGTTGCAATAGCTAGGCCTAACTTGCTTGCCGAAGAAGTTGGCTTTGTGGATGAAGGAATGCAAGATAGTCCCGTGGTTGAGTCAGCCAAGATTAGCAATGGGGATGCCCTAATTGATGGAGCACAGAGCATGACTAACGAAGATGAGATGTTGGATGTAGAACACGTTTTAAGGTTTGAGAATGAGATAGATGAAATACAGGAGTCTCTGTTACCATGCTTTGAGCAATTTCTTATGTGGCCGCCTAATGATTGTGTCACAATTGAGTGGGTTCAGGATGTGATGGTCATCCTTGAGCAGGCCTCACAGAAGATGTTGCCATCGGAATTCTGTCATGTTGTACCCACCCTTTTGGTGGACAAATTGACAGATGCTGCTTGCAGTATTTTGTGTAAAGAACCAAACTGTGTGGAGATCAATTGCGAAGGAGAAGATTCAAGAGTAATCGTAGTTGGCGCTATTCACGGGCAGTTTCATGATTTAATGTTTCTTTTCAAGCATGAAGGAGTGCCCTCTGAGAACCAGATTTACGTTTTTAATGGAAATTATGTAGATAAAGGAGCTTGGGGAATTGAAGTATTTTTGGTCTTACTGGCTTGGAAGGTATTGATGCCTCACAGAGTATTTCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCGAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGATGATGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGCATACATGCAGCCCCTTCACAGAGACCAAAACGGAATAAAACACATAGAGTGGATCTTGGCTCTTTAGCCGAGTTATTTGAAGTTAAAAGATCCTGTATAGATTGTCCTTATGAAGGTCCTAACATATTGTTGAGTGATGTTCTCTGGTCAAGACCATCAAACAGGTATGGTCTGAGGGATAATACAGGCCATAAGTTAGGTTTATGGTGGGGTCCTGATTGCACTGAGGAATTTCTAAAGAACCACAGTTTAAAGCTGATTATCAGATCACATGACGAACCCGATTCAAGGGCTGGTAAAGATGATGATCTTGGGAATATGCTGAGAGGATACAGCATAGATCATGATGGAGAATCGGGAAAACTTTGTACACTTTTTAGTGCTCCAGACTATCCACAGTTTGGTAAAAGGAGATGTAACAATAAGGGGGCATATGCCGTATTGAAGTTTCCTGATTTTGCCAGTCCTTCCTTTCACTCATTCAAAGGGACAGAAAGACCAATGGTGGATCCCTATGTTGATTTTGGTGCTAATAACATTGATTCGAGTAAACTAGACTCTTCTCAAAGTGCTTCAACCTCTACCCTTTCTGCTTCTGAAAGATTTTATCCAGAAAGGATGAGACCTGAGTTTGACTTTGGGGCATTAGGTATATACAATGCCCCATGTTGGAGTGTTGAACTTCCTGATGGATCAGGTGGCACTCAAGTTGTGGAGGTTCCAAGGGCATCACTGGTTGAAGGGTTACCTCTGCCTTCAAACATACAGGAGCCACACAAGGCTGCTTATGAGTATTTGTTTGAGCTAGTTGCTGGCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCTGCTTTGAGAAGTAGAGCTAGGAAAAGAAAGGGTCAGGGATAG 1899 0.4213 MSSLPCATALRKCLQVCSSRDIIQILSRMSFEGLDDQRMHLVTRMKEIAHGVIDKQPRVAIARPNLLAEEVGFVDEGMQDSPVVESAKISNGDALIDGAQSMTNEDEMLDVEHVLRFENEIDEIQESLLPCFEQFLMWPPNDCVTIEWVQDVMVILEQASQKMLPSEFCHVVPTLLVDKLTDAACSILCKEPNCVEINCEGEDSRVIVVGAIHGQFHDLMFLFKHEGVPSENQIYVFNGNYVDKGAWGIEVFLVLLAWKVLMPHRVFLLRGNHESRYCTARYGFKKEVWAKYGDQGDDVYNKFLECFKELPLASVIANCVYTTHGGLFRSIHAAPSQRPKRNKTHRVDLGSLAELFEVKRSCIDCPYEGPNILLSDVLWSRPSNRYGLRDNTGHKLGLWWGPDCTEEFLKNHSLKLIIRSHDEPDSRAGKDDDLGNMLRGYSIDHDGESGKLCTLFSAPDYPQFGKRRCNNKGAYAVLKFPDFASPSFHSFKGTERPMVDPYVDFGANNIDSSKLDSSQSASTSTLSASERFYPERMRPEFDFGALGIYNAPCWSVELPDGSGGTQVVEVPRASLVEGLPLPSNIQEPHKAAYEYLFELVAGLKHMIVTRETENRARVSALRSRARKRKGQG 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00005 632 Pfam Calcineurin-like phosphoesterase 205 422 IPR004843 GO:0016787
Vium6674g00005 632 SUPERFAMILY Metallo-dependent phosphatases 168 501 IPR029052 -
Vium6674g00005 632 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 97 616 - -
Vium6674g00005 632 ProSitePatterns Serine/threonine specific protein phosphatases signature. 269 274 IPR006186 GO:0016787
Vium6674g00005 632 PRINTS Serine/threonine phosphatase family signature 235 262 IPR006186 GO:0016787
Vium6674g00005 632 PRINTS Serine/threonine phosphatase family signature 305 331 IPR006186 GO:0016787
Vium6674g00005 632 PRINTS Serine/threonine phosphatase family signature 268 292 IPR006186 GO:0016787
Vium6674g00005 632 PRINTS Serine/threonine phosphatase family signature 451 467 IPR006186 GO:0016787
Vium6674g00005 632 PRINTS Serine/threonine phosphatase family signature 205 232 IPR006186 GO:0016787
Vium6674g00005 632 Gene3D - 144 531 IPR029052 -
Vium6674g00005 632 SMART pp2a_7 172 495 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00005 Vium-Chr6674 30394 36150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00005 136 416 Calmodulin-binding Proteins AT5G63870 51.546 3.00e-96 296