Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00004 ATGGACCACCAGAAAGAGAGAATTAAGAATGGGTGCCAGAAGATTTTGGAAGGAATAAATTCGATGTCTTTGGCAAACTTAGATGATCAGCAAGTACATTCTTTAGTGATGATGAGAGAAATAGCACGTGGGGTTGTTGATGACAGAGATAGAAAGGTGACTAGGAGTGATGTCATCACTGCCTTGCGCTACAGCATTGAGAAAATGGTCTGTTCATCCAGGGATATCATTCAGATATTAAGTAGAATGTCCTTTGAAGGTTTGGATGACCAAAGGATGCATTTAGTGACGAGGATGAAAGAAATTGCACATGGGGTTATTGATAAACAACCTCGAGTTGCAATAGCTAGGCCTAACTTGCTTGCCGAAGAAGTTGGCTTTGTGGATGAAGGAATGCAAGATAGTCCCGTGGTTGAGTCAGCCAAGATTAGCAATGGGGATGCCCTAATTGATGGAGCACAGAGCATGACTAACGAAGATGAGATGTTGGATGTAGAACACGTTTTAAGGTTTGAGAATGAGATAGATGAAATACAGGAGTCTCTGTTACCATGCTTTGAGCAATTTCTTATGTGGCCGCCTAATGATTGTGTCACAATTGAGTGGGTTCAGGATGTGATGGTCATCCTTGAGCAGGCCTCACAGAAGATGTTGCCATCGGAATTCTGTCATGTTGTACCCACCCTTTTGGTGGACAAATTGACAGATGCTGCTTGCAGTATTTTGTGTAAAGAACCAAACTGTGTGGAGATCAATTGCGAAGGAGAAGATTCAAGAGTAATCGTAGTTGGCGCTATTCACGGGCAGTTTCATGATTTAATGTTTCTTTTCAAGCATGAAGGAGTGCCCTCTGAGAACCAGATTTACGTTTTTAATGGAAATTATGTAGATAAAGGAGCTTGGGGAATTGAAGTATTTTTGGTCTTACTGGCTTGGAAGGTATTGATGCCTCACAGAGTATTTCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCGAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGATGATGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGCATACATGCAGCCCCTTCACAGAGACCAAAACGGAATAAAACACATAGAGTGGATCTTGGCTCTTTAGCCGAGTTATTTGAAGTTAAAAGATCCTGTATAGATTGTCCTTATGAAGGTCCTAACATATTGTTGAGTGATGTTCTCTGGTCAAGACCATCAAACAGGTATGGTCTGAGGGATAATACAGGCCATAAGTTAGGTTTATGGTGGGGTCCTGATTGCACTGAGGAATTTCTAAAGAACCACAGTTTAAAGCTGATTATCAGATCACATGACGAACCCGATTCAAGGGCTGGTAAAGATGATGATCTTGGGAATATGCTGAGAGGATACAGCATAGATCATGATGGAGAATCGGGAAAACTTTGTACACTTTTTAGTGCTCCAGACTATCCACAGTTTGGTAAAAGGAGATGTAACAATAAGGGGGCATATGCCGTATTGAAGTTTCCTGATTTTGCCAGTCCTTCCTTTCACTCATTCAAAGGGACAGAAAGACCAATGGTGGATCCCTATGTTGATTTTGGTGCTAATAACATTGATTCGAGTAAACTAGACTCTTCTCAAAGTAGATGGAAACACTGA 1737 0.4111 MDHQKERIKNGCQKILEGINSMSLANLDDQQVHSLVMMREIARGVVDDRDRKVTRSDVITALRYSIEKMVCSSRDIIQILSRMSFEGLDDQRMHLVTRMKEIAHGVIDKQPRVAIARPNLLAEEVGFVDEGMQDSPVVESAKISNGDALIDGAQSMTNEDEMLDVEHVLRFENEIDEIQESLLPCFEQFLMWPPNDCVTIEWVQDVMVILEQASQKMLPSEFCHVVPTLLVDKLTDAACSILCKEPNCVEINCEGEDSRVIVVGAIHGQFHDLMFLFKHEGVPSENQIYVFNGNYVDKGAWGIEVFLVLLAWKVLMPHRVFLLRGNHESRYCTARYGFKKEVWAKYGDQGDDVYNKFLECFKELPLASVIANCVYTTHGGLFRSIHAAPSQRPKRNKTHRVDLGSLAELFEVKRSCIDCPYEGPNILLSDVLWSRPSNRYGLRDNTGHKLGLWWGPDCTEEFLKNHSLKLIIRSHDEPDSRAGKDDDLGNMLRGYSIDHDGESGKLCTLFSAPDYPQFGKRRCNNKGAYAVLKFPDFASPSFHSFKGTERPMVDPYVDFGANNIDSSKLDSSQSRWKH 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00004 578 Gene3D - 208 566 IPR029052 -
Vium6674g00004 578 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 555 - -
Vium6674g00004 578 Pfam Calcineurin-like phosphoesterase 259 476 IPR004843 GO:0016787
Vium6674g00004 578 SUPERFAMILY Metallo-dependent phosphatases 222 555 IPR029052 -
Vium6674g00004 578 ProSitePatterns Serine/threonine specific protein phosphatases signature. 323 328 IPR006186 GO:0016787
Vium6674g00004 578 PRINTS Serine/threonine phosphatase family signature 289 316 IPR006186 GO:0016787
Vium6674g00004 578 PRINTS Serine/threonine phosphatase family signature 505 521 IPR006186 GO:0016787
Vium6674g00004 578 PRINTS Serine/threonine phosphatase family signature 322 346 IPR006186 GO:0016787
Vium6674g00004 578 PRINTS Serine/threonine phosphatase family signature 259 286 IPR006186 GO:0016787
Vium6674g00004 578 PRINTS Serine/threonine phosphatase family signature 359 385 IPR006186 GO:0016787
Vium6674g00004 578 SMART pp2a_7 226 549 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00004 Vium-Chr6674 30182 35043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00004 190 470 Calmodulin-binding Proteins AT5G63870 51.546 8.23e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00004 K04460 - gmx:100779241 815.068