Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6674g00002 ATGACGCGGGGGAGGATCAGGGCAAGGCTCCGTAGGAGGAGCCATCTTTACACATTTGGTTGCCTGAAGCCAACCACCACCGAGGAGTTGCCCTATTCACTTCAAGGTCCTGGCTACTCGCGAACAGTCTTCTGCAACCAGCCTCTACTCCATGAAAAGAATTCCCTATTTTACTGCAAGAATGATATATCAACCACCAAGTACAATGTCATAACGTTTCTGCCTAAGGCATTGTTTGAACAGTTTCGAAGGGTTGCTAACATATACTTTCTTTTGGCTGCTTGCCTTTCGGCTTCTCCAATTTCGCCTTTCAGCGCACTGAGCATGGTTGCACCTCTGGCGTTTGTTGTGGGACTTAGTATGGTGAAGGAGGCATTGGAGGATTCTCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGACGGAAAGTTTGTCTCCACATAGGCAATGGCACTTTCGGCCTAAGATCGTGGCAGAAGATTGTGGTTGGGGATGTGGTCAAAGTAGAAAAAGATCAATTTTTTCCAGCCGACTTGCTTCTCTTGGCGTCAAGTTATGAGGATGGAATATGCTATGTGGAAACAATGAATTTAGATGGAGAGACCAACTTGAAAGTGAAGAGATCCTTGGAGGCTACCTTGTCTCTGGATAACGACGAGGCTTTTAAGGATTTCTCTGCAACAATATATTGTGAAGATCCAAATCCCAATCTTTACACTTTTATTGGGAACTTTGAGCATGAAAATCAGGTTTATCCTCTTGATCCTAGTCAAATTCTTCTCAGAGATTCGAAGCTTAGGAACACTGATCATGTTTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAGAGAAGCACAATAGAAAAAAAGATGGATTATATCATATATACACTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAGCCCCAACTTGGTGGTATTTACGGCCTGACATTATTGAATACCAGTTTGATCCTAAGAAAATTGGATTGGCTGGAATGAGCCATCTGATTACTGCACTCATTCTCTATGGATATTTGATTCCTATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTGACCAAGACATTCAAATGTATGATGATGAAACTGGAACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCCGGTACTGCATATGGTGTTCGTTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCCGGACATGGATATGTCTAATTTTTCCATTCCTGAGGAGAGTAAAGTGCCATGGGAAAATATCACTGTAGATGAAGAATCTGAACTGGGGAATGTTGCTAATTCCAAGAATGATGAAGATCAAAGGACTTCCATAAAGGGATTTGGTTTTGAAGATGATCGCCTCATGAATGGTAACTGGATGAAAGAACCCAATGCCGATGTTCTTTTACTGTTTTTCCGGATATTAGCAATTTGCCATACTGCCATCCCTGAACTAAATGAGGAGACCGACTATTGTACATATGAGGCCGAGTCACCTGATGAAGGGGCTTTTCTAGTAGCAGCCAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGTCATCCGCGAAAGATTTCCTGCCTCAGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGTGCGTGACGAGGAGGGAAACATCATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATCTATTTGGACGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGCTTGAGAACACTAGCCTTGGCCTATAGAGAGCTTGACGACCTAGAGTACTCTGTTTGGAATAGCAAGTTTCAGAAGGCCAAAACAGCTATTGGGCCTGACAGAGAGGCAATGCTTGATCAGGTTTCAGATGTTATGGAAAGAGAGTTGATACTTGTTGGCGCTACTGCTGTTGAGGATAAACTACAGAAAGGGGTGCCACAATGCATTGACAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGGTTTGCTTGTAGTTTACTTCGACAGGGCATGAGGCAAATCTGTATCACAATGAATTCAGATTCAGCAACCAATGATGCGAAAGAGGTCATCAAAGGAAACATCTTGAATCAAATCACCAATGCCTCGCAAATGATAAAGCTAGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACGTATGCTTTAGAAGATGATGTCAAACTCCAATTTTTGGGACTGGCTGTTGGCTGTGCGTCTGTTATTTGTTGTCGTGTGTCTCCAAAGCAAAAAGCACTGGTTACAAGGCTAGTGAAAGAAGGAACTGGGAAGACCACTTTGGCCATTGGTGATGGTGCAAATGATGTTGGCATGATTCAGGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGCTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATTTTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCCGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGACGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTCATCTTCTTCCTTGTCATTATCATCTTCTATGACCAAGCATTCCGTGCCAATGGCCATGTTGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATCTGGACTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGAAGCATAACCACTTGGTACCTCTTTCTCTTGTTATATGGCATGCTTCCACCAAAACATAGCAAATCTGCCTACCAAATATTGGTGGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAACAACCGTATTAGTAACAATTACATGCGTTCTTCCATATCTCGCCCACATATCCTTCCAAAGATGTTCTCATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAGCACATGTGGACGAGGGAGCGGTCTAAAGCAAGGCAAGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCATTTTAGAGGTAAGTTGCAGAAGAAGCAGCAGCAGCAGTCTTCAGTGGGGTCTTCAGTGGGATCTTTGTCCCCGTTATGA 3693 0.4222 MTRGRIRARLRRRSHLYTFGCLKPTTTEELPYSLQGPGYSRTVFCNQPLLHEKNSLFYCKNDISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSALSMVAPLAFVVGLSMVKEALEDSRRFFQDVKVNRRKVCLHIGNGTFGLRSWQKIVVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDEAFKDFSATIYCEDPNPNLYTFIGNFEHENQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQAPTWWYLRPDIIEYQFDPKKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFIDQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEPDMDMSNFSIPEESKVPWENITVDEESELGNVANSKNDEDQRTSIKGFGFEDDRLMNGNWMKEPNADVLLLFFRILAICHTAIPELNEETDYCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFPASGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKIYLDATTRHLNEYGEAGLRTLALAYRELDDLEYSVWNSKFQKAKTAIGPDREAMLDQVSDVMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMRQICITMNSDSATNDAKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKLQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRANGHVADMAAVGTTMFTCIIWTVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLYGMLPPKHSKSAYQILVEVLAPAPIYWTTTVLVTITCVLPYLAHISFQRCSHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHFRGKLQKKQQQQSSVGSSVGSLSPL 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6674g00002 1230 Gene3D - 420 434 IPR023214 -
Vium6674g00002 1230 Pfam Cation transport ATPase (P-type) 550 651 - -
Vium6674g00002 1230 SFLD p-type atpase 405 931 IPR044492 -
Vium6674g00002 1230 FunFam Phospholipid-transporting ATPase 591 722 - -
Vium6674g00002 1230 Pfam Phospholipid-translocating ATPase N-terminal 43 109 IPR032631 -
Vium6674g00002 1230 FunFam Phospholipid-transporting ATPase 119 289 - -
Vium6674g00002 1230 NCBIfam phospholipid-translocating P-type ATPase 58 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium6674g00002 1230 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Vium6674g00002 1230 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vium6674g00002 1230 CDD P-type_ATPase_APLT_Dnf-like 61 1040 - -
Vium6674g00002 1230 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1190 - -
Vium6674g00002 1230 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Vium6674g00002 1230 SUPERFAMILY Calcium ATPase, transduction domain A 143 287 IPR008250 -
Vium6674g00002 1230 FunFam Phospholipid-transporting ATPase 724 920 - -
Vium6674g00002 1230 NCBIfam HAD-IC family P-type ATPase 847 961 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6674g00002 1230 MobiDBLite consensus disorder prediction 1209 1230 - -
Vium6674g00002 1230 MobiDBLite consensus disorder prediction 1212 1230 - -
Vium6674g00002 1230 Gene3D - 591 723 IPR023299 GO:0000166
Vium6674g00002 1230 Gene3D - 435 471 IPR023299 GO:0000166
Vium6674g00002 1230 Gene3D - 112 289 - -
Vium6674g00002 1230 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1149 IPR023298 -
Vium6674g00002 1230 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Vium6674g00002 1230 Gene3D - 724 920 IPR023214 -
Vium6674g00002 1230 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Vium6674g00002 1230 SUPERFAMILY HAD-like 411 924 IPR036412 -
Vium6674g00002 1230 SFLD C1.7: P-type atpase like 405 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6674g00002 Vium-Chr6674 8958 15727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6674g00002 1 1229 Primary Pumps ATPases AT1G17500 74.249 0.0 1904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6674g00002 K01530 - gmx:100778710 2187.53