Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6669g00003 ATGGGTATGGGGAGAACACTGTTCATCTTTGTTTTGTGCTTGTGGATTCCCCTGGAAGTGGTGGGGAGGAAAGAACCTTCTTCACCTACCAGTGTGGATTCCTCTGTTTCTTCAAGACCGAAGGTTGTGAAATTTGGAGCCCTATTCCCTATGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGCAACAATGGAAGCTCTGCAATTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAACAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTTTCTTCTCTACAGTACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATATATGTAGATGATGACAATGGCAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGTTCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCCATTGCCAAGAAGCTCGGAATGATGGGCAGTGGCTACGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTCAGAGTCACCTGACCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGACACTGATCTCAAGAAGAATCTTCTCTCCACCTTGAAAAGCCAAAGGGCCAAAGACACTGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGGGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGAAACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACATTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTAGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACAAGGACAAAAATTTAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTACTGGTCTAATCATTCTGGTCTGACAGTTGTAGCTCCTGAAACTTTATATCTGAAAAAATCATCAAACACACCTTTGCTGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGGGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAACAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAACAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATAGTGGATTTTACTCAACCTTTCATGCCCTCAGGGCTTGTTGTTGTTGTTCCTTTTAAAGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACCATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACTACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAATATAGCTGAATCTAGAATAGTTACGCTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGACCTCATGCTGGAGGAGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAGCTCTTGATGTCCAGCAGTCAGTGTAAATTCAGAACTGTTGGCCGGGAGTTCACTAAGAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACCGCCATTCTTCAACTCTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAAAAAGGAGTGTACAACCGTAGATGTTGATTCAAACAAACTAGCTCTGACAAGATTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTCATAATTTTCTTTGCCAGAATCTTCTGTCAATATAACAAATTCAGCCCAGAATCTGAGAAAACTGATGAGGAACTCCAACCAGTGAGGAGGTCTAGACGTCCAAGCAGAACTCCTAGCCTGAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAGAAAAGGAGACACAGCCAAAGCTTGGATGATCCTTCTGTTTCATCAGCCATCTAG 2808 0.427 MGMGRTLFIFVLCLWIPLEVVGRKEPSSPTSVDSSVSSRPKVVKFGALFPMDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLATMEALQLMENDVVAVVGPLSSGTAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLPSVLDSSESPDPDTMNLLQGIVAFRHHIPDTDLKKNLLSTLKSQRAKDTVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQETNGSMLHLASLRTFDGGPQFLQTILGMNFTGVSGQIEFDKDKNLVHPAYEILNIGGSGSRRIGYWSNHSGLTVVAPETLYLKKSSNTPLLRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDNNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTLPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPHAGGVVAVVDELPYIELLMSSSQCKFRTVGREFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTVDVDSNKLALTRFWGLFLICGIACFITLIIFFARIFCQYNKFSPESEKTDEELQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDPSVSSAI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6669g00003 935 FunFam Glutamate receptor 158 322 - -
Vium6669g00003 935 MobiDBLite consensus disorder prediction 914 935 - -
Vium6669g00003 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Vium6669g00003 935 Gene3D - 473 590 - -
Vium6669g00003 935 Gene3D - 62 406 - -
Vium6669g00003 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Vium6669g00003 935 Gene3D - 742 786 - -
Vium6669g00003 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Vium6669g00003 935 FunFam Glutamate receptor 475 591 - -
Vium6669g00003 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Vium6669g00003 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 882 IPR015683 -
Vium6669g00003 935 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Vium6669g00003 935 MobiDBLite consensus disorder prediction 876 895 - -
Vium6669g00003 935 FunFam Glutamate receptor 717 825 - -
Vium6669g00003 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Vium6669g00003 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Vium6669g00003 935 CDD GluR_Plant 478 821 - -
Vium6669g00003 935 FunFam Glutamate receptor 591 721 - -
Vium6669g00003 935 PIRSF IGluLR_plant 3 934 IPR017103 -
Vium6669g00003 935 Gene3D - 787 820 - -
Vium6669g00003 935 Gene3D - 591 711 - -
Vium6669g00003 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Vium6669g00003 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Vium6669g00003 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vium6669g00003 935 Gene3D - 158 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6669g00003 Vium-Chr6669 13660 19120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6669g00003 39 788 Ion Channels AT1G05200 68.400 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6669g00003 K05387 - gmx:100802782 1617.82