Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6669g00002 ATGGGTATGGGGAGAACACTGTTCATCTTTGTTTTGTGCTTGTGGATTCCCCTGGAAGTGGTGGGGAGGAAAGAACCTTCTTCACCTACCAGTGTGGATTCCTCTGTTTCTTCAAGACCGAAGGTTGTGAAATTTGGAGCCCTATTCCCTATGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGCAACAATGGAAGCTCTGCAATTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAACAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTTTCTTCTCTACAGTACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATATATGTAGATGATGACAATGGCAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGTTCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCCATTGCCAAGAAGCTCGGAATGATGGGCAGTGGCTACGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTCAGAGTCACCTGACCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGACACTGATCTCAAGAAGAATCTTCTCTCCACCTTGAAAAGCCAAAGGGCCAAAGACACTGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGGGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGAAACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACATTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTAGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACAAGGACAAAAATTTAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTACTGGTCTAATCATTCTGGTCTGACAGTTGTAGCTCCTGAAACTTTATATCTGAAAAAATCATCAAACACACCTTTGCTGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGGGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAACAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAACAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATAGTGGATTTTACTCAACCTTTCATGCCCTCAGGGCTTGTTGTTGTTGTTCCTTTTAAAGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACCATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACTACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAATATAGCTGAATCTAGAATAGTTACGCTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGACCTCATGCTGGAGGAGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAGCTCTTGATGTCCAGCAGTCAGTGTAAATTCAGAACTGTTGGCCGGGAGTTCACTAAGAGTGGCTGGGGATTTGTGAGTATCTCTTCTTGCATGTCTAAAGTTAAGGATTCCATATGTTCATCCATTATTTAA 2424 0.4245 MGMGRTLFIFVLCLWIPLEVVGRKEPSSPTSVDSSVSSRPKVVKFGALFPMDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLATMEALQLMENDVVAVVGPLSSGTAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLPSVLDSSESPDPDTMNLLQGIVAFRHHIPDTDLKKNLLSTLKSQRAKDTVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQETNGSMLHLASLRTFDGGPQFLQTILGMNFTGVSGQIEFDKDKNLVHPAYEILNIGGSGSRRIGYWSNHSGLTVVAPETLYLKKSSNTPLLRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDNNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTLPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPHAGGVVAVVDELPYIELLMSSSQCKFRTVGREFTKSGWGFVSISSCMSKVKDSICSSII 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6669g00002 807 SUPERFAMILY Periplasmic binding protein-like II 455 789 - -
Vium6669g00002 807 Gene3D - 473 590 - -
Vium6669g00002 807 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Vium6669g00002 807 FunFam Glutamate receptor 475 591 - -
Vium6669g00002 807 Gene3D - 62 406 - -
Vium6669g00002 807 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Vium6669g00002 807 Pfam Ligand-gated ion channel 600 769 IPR001320 GO:0015276|GO:0016020
Vium6669g00002 807 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Vium6669g00002 807 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 800 IPR015683 -
Vium6669g00002 807 FunFam Glutamate receptor 158 323 - -
Vium6669g00002 807 FunFam Glutamate receptor 750 786 - -
Vium6669g00002 807 Gene3D - 591 713 - -
Vium6669g00002 807 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vium6669g00002 807 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Vium6669g00002 807 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Vium6669g00002 807 SMART GluR_14 481 804 IPR001320 GO:0015276|GO:0016020
Vium6669g00002 807 Gene3D - 158 431 - -
Vium6669g00002 807 PIRSF IGluLR_plant 3 793 IPR017103 -
Vium6669g00002 807 FunFam Glutamate receptor 591 721 - -
Vium6669g00002 807 Pfam Bacterial extracellular solute-binding proteins, family 3 490 777 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6669g00002 Vium-Chr6669 13655 18184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6669g00002 39 789 Ion Channels AT1G05200 68.442 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6669g00002 K05387 - gmx:100802782 1381.31