Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6666g00003 ATGTTAGCTGGTGGAGCTATATCTTGGAGAAGTGCCAAGCAGACATTATCTGCTACTTCTACTATGAAAGCTGAGTTCGTTTCTTGTTTTGAGACTACCTCGCATGGTGTATGGTTAAAGAGTTTCTTTTCTGGGCTCAGAGTTGTGGACTTTATTTCTAGGCCATTAAAGTTGTACTGTGACAACTCTGCTGCGGTGTTTATGGCTAAGAACAATAAAAGTGGATGTCGAAGTAAGCACATTGACATCAAATACTTAGCCATTAGAGAACATGTTAAGGAAAAGAAAGTGGTCATTGAACACATAAGCACTGAGTTGATGATTGTTGATCCTTTAACTAAAGGCATGCCACCAAAGAATTTTAAGGATCATGTAGTGCAAATGGAACTTGGTTCCGAAAATAATAGGTTGTGGTATAACATGCAAAGGGGAAAGGTTAAGCTAGATGAGGATCTACGTCCTGATCGTGAGGATGATTTCCAAACAGATGATGAAGAAAATCAGGCACAAAGGGTGTTTGAACATTTGGATGATGATACTGATTCAGATAATTCACCTCCTTCACCAAGTTTGTCCAACGATGTTTCCATGATCTCTTGGCCTCAAAGCTATAGACAATCTATGGACATGTTAACTAGTGCAACACCTCCTGGAATTAATTTGTTAAAGAGATTTGGTTCAGTGGGGAGAGGAAATTCTCCCATTACATCATTCAAGAGATCTCAAGAACACCAAGAGGATTCTACCTTATCTCTACCCCTTGTTTCTGAGACATGTGGATTCAAACAAGAGAATCGTCTTGCATCAGTACCACGCCTGCAACCACTTAGCAGTGCAAAATTTTCTGTGGACGAATTGCCACCGCCACATGAACAATGTTCATATACAAAATCAGTAATTAATGGAACCAATATACTATGTGGAATAGGACTTCTTACCACTCCATATGCAATAAAAGAAGGAGGGTTTCTGAGCCTTGCAATACTTTTAATGTTTTCTCTCATGTGTTGTTATACTGGGATGCTACTAATAAAATGTTTAGAAAGCAATGATGGACTCAAAACCTACCCAGATATTGGCCAAGCTGCTTTTGGAATTGTTGGTCGCTTGGGGATTGCAATATTTCTATACGTGGAACTTTTTGCTTCTTGTGTTGAGTATATAATACTAGTCAGTGATAACCTCTCCTCACTATATCCTAACACCCAGATGAAATTTGGTGGGATTGATTTGAATTCTGAAGAAATTTATGCCATCACAGCAGCAATTATTGTTCTACCAACAGTTTGGTTGCGAAATCTAAGCTTACTTTCTTATATTTCAGTTGGAGGAATATTTGCAACAATACTCGTTGCTCTTTGTTTGTTTTGGGTTGGGACAATGGACCAAGTTGTTGGATATAAACCAGGAAAAAAAATTCTAGACTTGGCAAACTTACCTGTCTCAGTTGGTCTCTATAGTTTTTGCTTTGCTGGCCATGCTGTTTTTCCTAACATCTACTCTTCTATGAAGGAACCATCCAAATTCCCATCAGTGTTATTTGTCTGCTTTGGCTTTTGCAGTTTCATGTACATGAGTGTGGGAATAATGGGCTACTTAACATTTGGTGACTTAGTTTCATCTCAGTTTACCTTAAACATGCCTAAAGAATTGTATGCATCTGAGATTGCAACTTGGACAACGGTTGTGACTCCATTGGCAAAATATGCCTTAACGTTATTGCCGATTGCATTGAGCATAGAGGAACTAGCCACCTCTCCTAGACTAAGATGCCATGCTATGTCCGTTCTTGTCAGAACAAGTTTAGTGATTTTAAGCTTACTTGTTGCTCTCTACATTCCATATTTTGGTTCTTTGATGGCACTAATTGGTTCTTTCTTGTCAATACTAGTTGCACTTATTTATCCATGTGCATGTTTCCTCAAGTTACATAGAGGGAGATTATCAAATTCGGAGATAACAATTTGTGGTATTATAATTGTTGTGGGGCTAATATCCGCTTGTATGGGAACATTGTCAGCTGTTTCAAAAATAAGTGGGGAAGGGGACTGA 2052 0.386 MLAGGAISWRSAKQTLSATSTMKAEFVSCFETTSHGVWLKSFFSGLRVVDFISRPLKLYCDNSAAVFMAKNNKSGCRSKHIDIKYLAIREHVKEKKVVIEHISTELMIVDPLTKGMPPKNFKDHVVQMELGSENNRLWYNMQRGKVKLDEDLRPDREDDFQTDDEENQAQRVFEHLDDDTDSDNSPPSPSLSNDVSMISWPQSYRQSMDMLTSATPPGINLLKRFGSVGRGNSPITSFKRSQEHQEDSTLSLPLVSETCGFKQENRLASVPRLQPLSSAKFSVDELPPPHEQCSYTKSVINGTNILCGIGLLTTPYAIKEGGFLSLAILLMFSLMCCYTGMLLIKCLESNDGLKTYPDIGQAAFGIVGRLGIAIFLYVELFASCVEYIILVSDNLSSLYPNTQMKFGGIDLNSEEIYAITAAIIVLPTVWLRNLSLLSYISVGGIFATILVALCLFWVGTMDQVVGYKPGKKILDLANLPVSVGLYSFCFAGHAVFPNIYSSMKEPSKFPSVLFVCFGFCSFMYMSVGIMGYLTFGDLVSSQFTLNMPKELYASEIATWTTVVTPLAKYALTLLPIALSIEELATSPRLRCHAMSVLVRTSLVILSLLVALYIPYFGSLMALIGSFLSILVALIYPCACFLKLHRGRLSNSEITICGIIIVVGLISACMGTLSAVSKISGEGD 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6666g00003 683 Pfam Transmembrane amino acid transporter protein 293 672 IPR013057 -
Vium6666g00003 683 PANTHER OS05G0424000 PROTEIN-RELATED 301 663 - -
Vium6666g00003 683 MobiDBLite consensus disorder prediction 175 196 - -
Vium6666g00003 683 CDD RNase_HI_RT_Ty1 1 119 - -
Vium6666g00003 683 FunFam Amino acid transporter AVT1A 291 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6666g00003 Vium-Chr6666 35628 48815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6666g00003 146 681 Amino Acid or Auxin Permease AAAP Family AT5G02180 48.913 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6666g00003 K15015 - qsa:O6P43_016746 619.002