Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6666g00001 ATGGCTTCTTTGAGATCTTCTTCTTCCTTCTGGTGCTACCGATGCAACCGCGTCGTTAGGGTTTCCCTCGTCGCAGAACCGCAGCGAGATCCTACCATTCTCTGCCCCGATTGTCACTCCGGTTTTCTCGAAGAGGTACAAACGCCTCCCCAGTCGCGCCGATCCACACGCGCCGGCTCGCCCTTCAATCCCGTGATCGTGCTGCGCGGTGGGAACGGAAACGAAAACGCAAGCGCCAACGAAAGCGAAAATGACGTCGCCTCGGGGAACTTCGAGCTTTACTACAACGACGGCGTTTCGGGTCCGGGCCCCAGCGGTCTGCGCCCTTTGCCCGCGGGCGTGACCGACTTCCTCATGGGCTCGTCGGGCTTCGATCACTTGCTGGATCAGCTGGACGGCACCACCGTACGCCTTGACCGGGCAGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCCAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAACTTTCAAGTGGATTGCGACGCACGTGAGATGCCGTGCGGGCACGTGTATCACTCGGAGTGCATCGTGCCGTGGCTGTCTGTGCGGAACTCGTGCCCCGTATGCCGCCGCGTGGTTCCTTCAGATGAAGTTGATGATAACAATACGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGTGGTAGAGAACTGCCCCTCGTGTACACGGAAATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCCAGGAGAGTCTCCTGGGATTCTTCTATTGGTAGGTCTAGGGAGAGTAGGGGCTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATTTCGGAAGAGTTAGAAGTTCCTTTTCTCGTGGAACGAGAAACTCTCGTCTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 984 0.5722 MASLRSSSSFWCYRCNRVVRVSLVAEPQRDPTILCPDCHSGFLEEVQTPPQSRRSTRAGSPFNPVIVLRGGNGNENASANESENDVASGNFELYYNDGVSGPGPSGLRPLPAGVTDFLMGSSGFDHLLDQLDGTTVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVDDNNTMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNSRLNGRSRSATTIFSRFRSRSRF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6666g00001 327 Pfam Ring finger domain 165 207 IPR001841 -
Vium6666g00001 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 213 IPR013083 -
Vium6666g00001 327 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Vium6666g00001 327 SUPERFAMILY RING/U-box 146 213 - -
Vium6666g00001 327 FunFam E3 ubiquitin-protein ligase RNF181 132 213 - -
Vium6666g00001 327 SMART ring_2 166 206 IPR001841 -
Vium6666g00001 327 Pfam Protein of unknown function (DUF1117) 221 321 IPR010543 -
Vium6666g00001 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 209 - -
Vium6666g00001 327 Pfam zinc-ribbon 9 45 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6666g00001 Vium-Chr6666 13245 16954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6666g00001 109 216 C3H Transcription Factor Family AT5G01980 41.818 7.50e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6666g00001 K11982 - gmx:121172634 451.055