Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6662g00001 ATGGGTAGTCTAGCAAGTCATCTTCCTCTAATTGTTATGGTAGGTCTGCAAGTTCATTATGCAGCACTTGCCATCTTCACAAGAGCAGCCCTGTTAGATGGGTTGAGTACAACAGTCTTTGTAGTGTACAGGCAAGGCATAGCAACCTTGGCTTTGGCCCCTATGTTTTTCTCTTCTAAGAGGAGACAATCGGTAAAAAGTTGTTTGGGATTCAGGAGCGTCTTTTTGATGTTCGTCACCGCTCTTGTTGGAGTCACAGCAAATCAGAATGCGTATTTCAGAGGTTTATATTATTCATCTTCTACTGCAGCTACAGCAATGAGTAATCTGATACCTGCTTTAACGTTTGTAATTGCAGCAATCGCGGGATTTGAGAAACTTGAACTACGAAGCTTGAGAAGCATGGCGAAGATATTAGGGACAATTTGCTGTGTTAGTGGAGCCTTAACCATGGCCTTGGTCAAAGGACATAAACTCTTACACACAGAGTTCCTTCCTTCTATACATCTCACTGGCAGTAGTGAAGGTGACGATTGGCTGCTGGGTTGTCTATTGCTTTTAGCAAGCAGTGTTTTCTGGTCTTGTTGGATGATCCTGCAGGTACCAATCGCTTCGTCCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTCTTTTCAACAGTACAGTCAGCCTTATTTGCCCTACTCTCAGAGCCGGATCTTGAAGCATGGATTTTGCATTCACCTTTACAGATTTCATGTTCTTTATACGCAGGACTCGGAATAGCGGTTAGTTTCTTTATTCAATCCTGGTGCATCTCAGAAAGAGGTCCTCTATACTGTGCAATGTTCAACCCTTTAGCAACAGTAATCACTGCTTTCATAAGTGCAACATTCTTACAAGAAGAATTATACATCGGAAGTTTGATAGGGGCTGTTGGAGTTATTGCTGGTTTGTATATTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGCGGCACCACAATCAAACTTGCAAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGATAAATCTGAACATGTAACAGAGACAGATAGCAAGGTGTAG 1104 0.4212 MGSLASHLPLIVMVGLQVHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPMFFSSKRRQSVKSCLGFRSVFLMFVTALVGVTANQNAYFRGLYYSSSTAATAMSNLIPALTFVIAAIAGFEKLELRSLRSMAKILGTICCVSGALTMALVKGHKLLHTEFLPSIHLTGSSEGDDWLLGCLLLLASSVFWSCWMILQVPIASSCPDHLLSTFWMCLFSTVQSALFALLSEPDLEAWILHSPLQISCSLYAGLGIAVSFFIQSWCISERGPLYCAMFNPLATVITAFISATFLQEELYIGSLIGAVGVIAGLYIVLWGKAKEFAEIKPAAPQSNLQDDEISSRIDLEQPLLSDKSEHVTETDSKV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6662g00001 367 PANTHER WAT1-RELATED PROTEIN 8 325 IPR030184 GO:0016020|GO:0022857
Vium6662g00001 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Vium6662g00001 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 216 322 - -
Vium6662g00001 367 MobiDBLite consensus disorder prediction 348 367 - -
Vium6662g00001 367 Pfam EamA-like transporter family 181 318 IPR000620 GO:0016020
Vium6662g00001 367 Pfam EamA-like transporter family 10 143 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6662g00001 Vium-Chr6662 17077 19548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6662g00001 1 367 Nodulin-like Gene Family AT4G30420 44.010 1.37e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6662g00001 - - gmx:100816384 620.157