Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6655g00005 ATGGAATACATGGCTGGTGGTTCAGTTGCTGATCTACTCCAAGCAGGTAATCCCCTTGATGAAATGTCAATTGCTTGCATTCTGCGTGACTTGCTGCATGCTGTTGATTATCTACACACTGAAGGGAAAATTCACAGAGACCTTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTAGCAGATTTTGGCGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGGAAGACATTTGTAGGAACGCCATTTTGGATGGCGCCTGAGGTTATTCAGAATACTGATGGATATAATGAGAAGGCAGATATTTGGTCTTTGGGAATCACTGCTATTGAAATGGCAAAGGGGGAGCCTCCACTAGCCGATCTTCACCCTATGAGAGTGCTTTTCATCATACCCCGGGAGAATCCTCCGCAGCTAGATGATCATTTTTCCCGTCCAATGAAAGAATTTGTCTCATTGTGCTTAAAGAAGGTTCCTGCCGAGAGGCCAAGTGCTAAGGAACTTTTGAAGGACCGTTTTATTCGGAATGCTAGGAGGAGTTCAAAGCTTGTAGAAAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGAAGATCTGGAAACACCTAGAAATGTCTCAAGAGGGATAGGGGAAGGATCAGATACTGTAAAAGTGGCTAGAGATGTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAATATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTTAGAGAGAAGAAAGCTGAAGCATCACATAATCAGGTAACCCAAAGAAAAGCTCCTGAGAGTGGTTATCAAGGGGGATCTGCTAATAGAAGGGCACTTAGTGAGTCACTTGAAAGTTCCTCTGGAAGAGATCGAGTTCCCTACCATGATGAGCATCTGGACAATCACACTGAAGATGATGAATTATCCGGAAATGGATCAGGAACGATTGTTATTCGATCGCCAAAAGGGTCAAGGTCATCTATATTCGGTGACCAGAGCTCTCAATATAGTAGCAGATATTCTTCTTTTGATGATGCTTCTACAAGTGGGACTGTTGTTTTACGTGGCCAGCATGATGAGCCTGATTCACCACAGCCACTAAGGTCTCGACTTGGACTTAGTGACAGAAATTCAAATTCCTCAATGGAAGACAGTGCGGCAAATCTTGCTGAGGCAAAGGCTGCTATGCAAGGAGGGCTCAGGAATTCTCGAGAAAGATTGGCCCGAGGAAAAATCAACAATGATAGACAGGAAGACAAGAAAGATGGAAAGGCTAGCAGCTTTGACTCTTCAAGGGGCATGTCAAGATCACATCATGCTAATAATGATGAAGGAAGTGCTAAAATAATGTTATCCTCAGTGCCATTATCTGCTTTACTTGTTCCTTCTTTAAAAGAGGCCATTGCTGATGATCCAGAAGGGGCAGTTGGGCGGGCAGTTATCAATTCTTTAATAAACATGGAGGGCTCAAAACCTAAATCCTGTGAAGCTCTTCTCAAACAGTTGCTTCAGCGATTGGCAAGTACAAAGGAAGATTCATTGAAGGACCTGCAGCGGCTAGCAGGGGAACTATTCAGCGAGACCAAGTCCACCGAAGAAACCCGAAACGCACTGGCTGATAACAGGAAAAAACAACAAAACAAGGAACATAATCCTAATAGCAATTTAAGTCCACTAGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACATCACGAGATCTAAACTCATCTTGA 1803 0.4304 MEYMAGGSVADLLQAGNPLDEMSIACILRDLLHAVDYLHTEGKIHRDLKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAERPSAKELLKDRFIRNARRSSKLVERIRERPKYQIKEEDLETPRNVSRGIGEGSDTVKVARDVRGEENNRPSDQGKTLKSAGWDFNIGGSQGTGTFRNVSRPPQFREKKAEASHNQVTQRKAPESGYQGGSANRRALSESLESSSGRDRVPYHDEHLDNHTEDDELSGNGSGTIVIRSPKGSRSSIFGDQSSQYSSRYSSFDDASTSGTVVLRGQHDEPDSPQPLRSRLGLSDRNSNSSMEDSAANLAEAKAAMQGGLRNSRERLARGKINNDRQEDKKDGKASSFDSSRGMSRSHHANNDEGSAKIMLSSVPLSALLVPSLKEAIADDPEGAVGRAVINSLINMEGSKPKSCEALLKQLLQRLASTKEDSLKDLQRLAGELFSETKSTEETRNALADNRKKQQNKEHNPNSNLSPLARFLLSRWQGQTSRDLNSS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6655g00005 600 MobiDBLite consensus disorder prediction 550 583 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 280 309 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 426 449 - -
Vium6655g00005 600 Pfam Protein kinase domain 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00005 600 Coils Coil 422 442 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 550 571 - -
Vium6655g00005 600 FunFam Serine/threonine-protein kinase 24 4 206 - -
Vium6655g00005 600 Gene3D Transferase(Phosphotransferase) domain 1 1 212 - -
Vium6655g00005 600 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00005 600 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00005 600 MobiDBLite consensus disorder prediction 219 237 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 310 329 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 330 376 - -
Vium6655g00005 600 SUPERFAMILY Protein kinase-like (PK-like) 1 199 IPR011009 -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 392 408 - -
Vium6655g00005 600 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 549 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 200 464 - -
Vium6655g00005 600 MobiDBLite consensus disorder prediction 248 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6655g00005 Vium-Chr6655 46169 53620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6655g00005 1 597 MAP Kinase Kinase Kinase Kinase AT3G15220 60.359 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vium6655g00005 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6655g00005 K08838 - gmx:100815042 986.482