Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6655g00004 ATGTCAATTGCTTGCATTCTGCGTGACTTGCTGCATGCTGTTGATTATCTACACACTGAAGGGAAAATTCACAGAGACCTTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTAGCAGATTTTGGCGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGGAAGACATTTGTAGGAACGCCATTTTGGATGGCGCCTGAGGTTATTCAGAATACTGATGGATATAATGAGAAGGCAGATATTTGGTCTTTGGGAATCACTGCTATTGAAATGGCAAAGGGGGAGCCTCCACTAGCCGATCTTCACCCTATGAGAGTGCTTTTCATCATACCCCGGGAGAATCCTCCGCAGCTAGATGATCATTTTTCCCGTCCAATGAAAGAATTTGTCTCATTGTGCTTAAAGAAGGTTCCTGCCGAGAGGCCAAGTGCTAAGGAACTTTTGAAGGACCGTTTTATTCGGAATGCTAGGAGGAGTTCAAAGCTTGTAGAAAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGAAGATCTGGAAACACCTAGAAATGTCTCAAGAGGGATAGGGGAAGGATCAGATACTGTAAAAGTGGCTAGAGATGTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAATATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTTAGAGAGAAGAAAGCTGAAGCATCACATAATCAGGTAACCCAAAGAAAAGCTCCTGAGAGTGGTTATCAAGGGGGATCTGCTAATAGAAGGGCACTTAGTGAGTCACTTGAAAGTTCCTCTGGAAGAGATCGAGTTCCCTACCATGATGAGCATCTGGACAATCACACTGAAGATGATGAATTATCCGGAAATGGATCAGGAACGATTGTTATTCGATCGCCAAAAGGGTCAAGGTCATCTATATTCGGTGACCAGAGCTCTCAATATAGTAGCAGATATTCTTCTTTTGATGATGCTTCTACAAGTGGGACTGTTGTTTTACGTGGCCAGCATGATGAGCCTGATTCACCACAGCCACTAAGGTCTCGACTTGGACTTAGTGACAGAAATTCAAATTCCTCAATGGAAGACAGTGCGGCAAATCTTGCTGAGGCAAAGGCTGCTATGCAAGGAGGGCTCAGGAATTCTCGAGAAAGATTGGCCCGAGGAAAAATCAACAATGATAGACAGGAAGACAAGAAAGATGGAAAGGCTAGCAGCTTTGACTCTTCAAGGGGCATGTCAAGATCACATCATGCTAATAATGATGAAGGAAGTGCTAAAATAATGTTATCCTCAGTGCCATTATCTGCTTTACTTGTTCCTTCTTTAAAAGAGGCCATTGCTGATGATCCAGAAGGGGCAGTTGGGCGGGCAGTTATCAATTCTTTAATAAACATGGAGGGCTCAAAACCTAAATCCTGTGAAGCTCTTCTCAAACAGTTGCTTCAGCGATTGGCAAGTACAAAGGAAGATTCATTGAAGGACCTGCAGCGGCTAGCAGGGGAACTATTCAGCGAGACCAAGTCCACCGAAGAAACCCGAAACGCACTGGCTGATAACAGGAAAAAACAACAAAACAAGGAACATAATCCTAATAGCAATTTAAGTCCACTAGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACATCACGAGATCTAAACTCATCTTGA 1740 0.4293 MSIACILRDLLHAVDYLHTEGKIHRDLKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAERPSAKELLKDRFIRNARRSSKLVERIRERPKYQIKEEDLETPRNVSRGIGEGSDTVKVARDVRGEENNRPSDQGKTLKSAGWDFNIGGSQGTGTFRNVSRPPQFREKKAEASHNQVTQRKAPESGYQGGSANRRALSESLESSSGRDRVPYHDEHLDNHTEDDELSGNGSGTIVIRSPKGSRSSIFGDQSSQYSSRYSSFDDASTSGTVVLRGQHDEPDSPQPLRSRLGLSDRNSNSSMEDSAANLAEAKAAMQGGLRNSRERLARGKINNDRQEDKKDGKASSFDSSRGMSRSHHANNDEGSAKIMLSSVPLSALLVPSLKEAIADDPEGAVGRAVINSLINMEGSKPKSCEALLKQLLQRLASTKEDSLKDLQRLAGELFSETKSTEETRNALADNRKKQQNKEHNPNSNLSPLARFLLSRWQGQTSRDLNSS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6655g00004 579 Pfam Protein kinase domain 6 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00004 579 MobiDBLite consensus disorder prediction 289 308 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 309 355 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 179 443 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 198 216 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 371 387 - -
Vium6655g00004 579 SUPERFAMILY Protein kinase-like (PK-like) 3 178 IPR011009 -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 227 243 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 259 288 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 529 562 - -
Vium6655g00004 579 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 2 528 - -
Vium6655g00004 579 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00004 579 Gene3D Transferase(Phosphotransferase) domain 1 1 191 - -
Vium6655g00004 579 Coils Coil 401 421 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 405 428 - -
Vium6655g00004 579 MobiDBLite consensus disorder prediction 529 550 - -
Vium6655g00004 579 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6655g00004 579 FunFam Serine/threonine-protein kinase PAK 6 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6655g00004 Vium-Chr6655 46169 53621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6655g00004 2 576 MAP Kinase Kinase Kinase Kinase AT3G15220 59.391 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vium6655g00004 Pkinase 6.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6655g00004 K08838 - gmx:100815042 950.273