Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium664g00004 ATGATGAGTGAACAATTGGGGCTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTTGTGCTGAAACTAGGGAACCAGACTGCAAAGACCAAGGTAATCAACAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTTAATTTCACTCTTACAGAACCCTTGGGAGTGCTGAATTTGGAAGTGTTTGATAAAGATCTGTTAAAGGCTGATGACAAGATGGGAAATGCTTTCCTCAACCTTCAACCATTAGTGTCTGCAGCGAGATTAAGAGATATCTTACGAGTGTCCTCTGGTGAGACAACCTTAAGGAAGGTCATACCTGATACTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAGTCTGGGGAACTAGAATTGATCATCAAGCTGGCCACACCTATTACTCCTAAAACATAG 504 0.4266 MMSEQLGLLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPLVSAARLRDILRVSSGETTLRKVIPDTENCLVRESSINCVNGEVVQNVWLRLRGVESGELELIIKLATPITPKT 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium664g00004 167 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vium664g00004 167 Pfam C2 domain 8 100 IPR000008 -
Vium664g00004 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 158 IPR035892 -
Vium664g00004 167 PRINTS C2 domain signature 68 76 IPR000008 -
Vium664g00004 167 PRINTS C2 domain signature 47 60 IPR000008 -
Vium664g00004 167 PRINTS C2 domain signature 23 35 IPR000008 -
Vium664g00004 167 CDD C2_ArfGAP 6 151 - -
Vium664g00004 167 SMART C2_3c 8 103 IPR000008 -
Vium664g00004 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 159 IPR044562 -
Vium664g00004 167 Gene3D C2 domain 1 117 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium664g00004 Vium-Chr664 9135 11344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium664g00004 2 155 C2H2 Transcription Factor Family AT4G21160 44.805 4.87e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium664g00004 - - gmx:100499880 308.916