Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6640g00006 ATGTCCATGGCAGGGCGGTTGCAGTTATACGACGGTGTTCGCGAAGAAGATAGTGGTGAAATATTTGGAGGCTCGAAAGACGATTCTTTGTGCCGTTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGCGTTTAATTGCGTTTTGCATTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTAAGAGGGAAGGGTGGATACGATGCCGTTTGCAAAGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAATTTGGTGTGGTGGATGATAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGCTTTCCGGTTGTGCGGATGAGAGGGTGGTTTTGGTTGGGGAGGATGTCGAGGGTGGTCTTGATGAAGATGATCACAACTTGGATGGGAGGGAGTTATCCGGTGCTAATGGGGTGAAAAGTAACGGTGATGAAGGAGGTGAACATAGACAATGTGATGATTCGGAGATGCCGGACAATGACATGGATGAGGCGGTTCTTGGAAACTCGGATAAGGGAAATGATTTAATGGGAGGGGAGGAAGGGTTTGATGGAGGGAAAATGCCTGAAGAGCAGGCTGTGGATATATCGGATGGGGCTAACAAAAGTGGGACTGGAGTGGTGAGTGGAGGCAAGCAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGATGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTGGGATTCATCTAGTGATGATTGTGATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAGCTGGATTACTGGTGTTGCAAAAGATCCCGGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTACAGTAGTCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGGGAAGCTACGTTTTACAGAAGAGGTTCTGAGGCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCATCCGTGCTTGTATGAAGAACAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTGTTTGGCAAATCTGCATCTGTGCGAAGCTCTTCCGATTCATCTTTGGCAACTGAGAACAGAACACCTGGTTCTCACACTGAAGGTCAATCTGAGTTGCGTGATTCTCCAGATGCAAATTCAGGTCTTGACAAATGTGCAACAGTACGCATTCCTTTGGGGACAAATCATCAAGCCGAAATACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAACAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCCCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTTCACATTTCAGAGAAAAGAGCTAAAGTTAAGCTGGAATTGGGTAATGCATTTTACGATTGGGACTTTGATCGGGTTGGTGAAGAAGTTAGGCTAATGTGGACGAAAGAAGAAGAGAAAAAGTTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGAGTTAGTTAGCTACTACTTCAATGTCTTTATATTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGATGACGAAGCTGGACCATTAAGGAATGTTTTTGGACCTCTGATACAGAATTCTGGACATGAGATGCAGAGTTCGCGAGGCTCCAGCTTATTAACCCCCAAAAAGACACATAAAAAGGGAAAATAG 2013 0.4555 MSMAGRLQLYDGVREEDSGEIFGGSKDDSLCRFERLFAEFFSEICAFNCVLHYPPMLSDGQDVDLYRLFLVVRGKGGYDAVCKGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDDRDKFGRRLMELQAEVEGLLSGCADERVVLVGEDVEGGLDEDDHNLDGRELSGANGVKSNGDEGGEHRQCDDSEMPDNDMDEAVLGNSDKGNDLMGGEEGFDGGKMPEEQAVDISDGANKSGTGVVSGGKQCDDSDDKGLVLDASGGNSDDDSSGHKRKREGSVWDSSSDDCDSPSRKRMRESAMDMLSWITGVAKDPGDPEVGSIPEKSKWKSYSSQEVWKQVLLFREATFYRRGSEASNEQRNWQNQKMHPCLYEEQVGTNYNLRDRLKCDKKLLFGKSASVRSSSDSSLATENRTPGSHTEGQSELRDSPDANSGLDKCATVRIPLGTNHQAEIPEWTGVTSESDSKWLGTRIWPQETVNTRLIERDPIGKGRQGSCGCPEEGSVECVRFHISEKRAKVKLELGNAFYDWDFDRVGEEVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRAELVSYYFNVFILQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGPLIQNSGHEMQSSRGSSLLTPKKTHKKGK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6640g00006 670 SUPERFAMILY ARID-like 39 123 IPR036431 GO:0003677
Vium6640g00006 670 SMART bright_3 35 121 IPR001606 GO:0003677
Vium6640g00006 670 Gene3D - 30 129 IPR036431 GO:0003677
Vium6640g00006 670 MobiDBLite consensus disorder prediction 422 455 - -
Vium6640g00006 670 CDD ARID 32 116 - -
Vium6640g00006 670 SMART ELM2_2 462 512 IPR000949 -
Vium6640g00006 670 MobiDBLite consensus disorder prediction 285 316 - -
Vium6640g00006 670 MobiDBLite consensus disorder prediction 645 660 - -
Vium6640g00006 670 Pfam ARID/BRIGHT DNA binding domain 52 114 IPR001606 GO:0003677
Vium6640g00006 670 MobiDBLite consensus disorder prediction 619 670 - -
Vium6640g00006 670 SMART ARID_2 31 116 - -
Vium6640g00006 670 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
Vium6640g00006 670 MobiDBLite consensus disorder prediction 172 316 - -
Vium6640g00006 670 MobiDBLite consensus disorder prediction 422 448 - -
Vium6640g00006 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 23 666 - -
Vium6640g00006 670 CDD SANT 561 608 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6640g00006 Vium-Chr6640 98878 103018 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium6640g00006 ARID 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6640g00006 - - pvu:PHAVU_010G100300g 953.74