Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6640g00005 ATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTAAGAGGGAAGGGTGGATACGATGCCGTTTGCAAAGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAATTTGGTGTGGTGGATGATAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGCTTTCCGGTTGTGCGGATGAGAGGGTGGTTTTGGTTGGGGAGGATGTCGAGGGTGGTCTTGATGAAGATGATCACAACTTGGATGGGAGGGAGTTATCCGGTGCTAATGGGGTGAAAAGTAACGGTGATGAAGGAGGTGAACATAGACAATGTGATGATTCGGAGATGCCGGACAATGACATGGATGAGGCGGTTCTTGGAAACTCGGATAAGGGAAATGATTTAATGGGAGGGGAGGAAGGGTTTGATGGAGGGAAAATGCCTGAAGAGCAGGCTGTGGATATATCGGATGGGGCTAACAAAAGTGGGACTGGAGTGGTGAGTGGAGGCAAGCAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGATGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTGGGATTCATCTAGTGATGATTGTGATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAGCTGGATTACTGGTGTTGCAAAAGATCCCGGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTACAGTAGTCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGGGAAGCTACGTTTTACAGAAGAGGTTCTGAGGCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCATCCGTGCTTGTATGAAGAACAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTGTTTGGCAAATCTGCATCTGTGCGAAGCTCTTCCGATTCATCTTTGGCAACTGAGAACAGAACACCTGGTTCTCACACTGAAGGTCAATCTGAGTTGCGTGATTCTCCAGATGCAAATTCAGGTCTTGACAAATGTGCAACAGTACGCATTCCTTTGGGGACAAATCATCAAGCCGAAATACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAACAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCCCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTTCACATTTCAGAGAAAAGAGCTAAAGTTAAGCTGGAATTGGGTAATGCATTTTACGATTGGGACTTTGATCGGGTTGGTGAAGAAGTTAGGCTAATGTGGACGAAAGAAGAAGAGAAAAAGTTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGAGTTAGTTAGCTACTACTTCAATGTCTTTATATTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGATGACGAAGCTGGACCATTAAGGAATGTTTTTGGACCTCTGATACAGAATTCTGGACATGAGATGCAGAGTTCGCGAGGCTCCAGCTTATTAACCCCCAAAAAGACACATAAAAAGGGAAAATAG 1848 0.4556 MLSDGQDVDLYRLFLVVRGKGGYDAVCKGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDDRDKFGRRLMELQAEVEGLLSGCADERVVLVGEDVEGGLDEDDHNLDGRELSGANGVKSNGDEGGEHRQCDDSEMPDNDMDEAVLGNSDKGNDLMGGEEGFDGGKMPEEQAVDISDGANKSGTGVVSGGKQCDDSDDKGLVLDASGGNSDDDSSGHKRKREGSVWDSSSDDCDSPSRKRMRESAMDMLSWITGVAKDPGDPEVGSIPEKSKWKSYSSQEVWKQVLLFREATFYRRGSEASNEQRNWQNQKMHPCLYEEQVGTNYNLRDRLKCDKKLLFGKSASVRSSSDSSLATENRTPGSHTEGQSELRDSPDANSGLDKCATVRIPLGTNHQAEIPEWTGVTSESDSKWLGTRIWPQETVNTRLIERDPIGKGRQGSCGCPEEGSVECVRFHISEKRAKVKLELGNAFYDWDFDRVGEEVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRAELVSYYFNVFILQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGPLIQNSGHEMQSSRGSSLLTPKKTHKKGK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6640g00005 615 Gene3D - 1 74 IPR036431 GO:0003677
Vium6640g00005 615 MobiDBLite consensus disorder prediction 590 605 - -
Vium6640g00005 615 MobiDBLite consensus disorder prediction 230 261 - -
Vium6640g00005 615 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 611 - -
Vium6640g00005 615 CDD SANT 506 553 IPR001005 -
Vium6640g00005 615 MobiDBLite consensus disorder prediction 564 615 - -
Vium6640g00005 615 MobiDBLite consensus disorder prediction 367 393 - -
Vium6640g00005 615 CDD ARID 4 61 - -
Vium6640g00005 615 SMART ELM2_2 407 457 IPR000949 -
Vium6640g00005 615 MobiDBLite consensus disorder prediction 367 400 - -
Vium6640g00005 615 MobiDBLite consensus disorder prediction 117 261 - -
Vium6640g00005 615 SMART bright_3 1 66 IPR001606 GO:0003677
Vium6640g00005 615 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Vium6640g00005 615 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vium6640g00005 615 SUPERFAMILY ARID-like 4 68 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6640g00005 Vium-Chr6640 98657 103018 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium6640g00005 ARID 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6640g00005 - - pvu:PHAVU_010G100300g 953.74