Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6640g00004 ATGTTCCTCTTTTTTCTTCTCTTCATTCTCATTCTCCACACTTCCTCCTCCTCCGCCACCATCCTTCTCCAAGGCAACGCCACTCTGCAAAGCCCCAACAACACTTTCCAACTGGGCTTCTTCAATTTCTTCCGAGGCCCGGGCCCGGGCCCGCCGAAATTCTACCTCGCCATCCGCCGCACCTCTTTGCCCAACCCCAACACCATTTGGGTCGCCAACCGCCTCCACCCCTCCCCCACCCAAGCCGCTTCATCCCTTGAACTCACCCCAACCGGTAAGTTACTCCTAACCCACTTCAACAACACTCTCTGGACCGCCGCCGGCGCCGCCACCGCCAACCTCACGCTCAAGCTTCACGATTCCGGAAACCTCGTCCTCCTCACTTCCGACGGCGTCGTTTCATGGCAGAGCTTCGATTCCCCCTCGGACACGTGGCTCCCCGGCATGAACCTCACGCGCTTCAACTCGCTCACCTCTTGGCGCACGGAGACGGACCCTTCCCCGGGGCTTTACACCCTGCGGTTGAAGCCATCCTTCTACGGCGAGTTCGAGCTCGTCTTCAACGATACCGTGTCGTACTGGTCCACCGGGAACTGGAGCAATGGGACATTCCTCAACATCCCAGAGATGACCATCCCCTACCTCTACGCCTTTCACTTCGCCGCGCCGTTCTCCCCCGCCGCGGCCTTCGGTTTCTCCGAACGCGCCATCGAGACGAGCTTCCGACCGCCGACGATGTTCCGCCTGGAGCCCTTCGGACAGGTCAAGCAGTACTCGTGGAACAGCCAATCGGGGTCCTGGCAGATGTTTTGGTTCAAGCCGGAGAGTGTGTGCCAGGTTCGGGGACTCTGCGGGGGGTTCGGGGTTTGCACTGGGGACACATCCAAATTCTGTGAGTGTGTGAGTGGGTTTGAGCCTTTGGATGGTCATGGGTGGGGTTCTGGTGATTACTCTCAAGGTTGTCACCGTGTGGACGCGGGGTGTGACGGGGGTGATGGGTTTGAAGATCTTGGTGCTGTGAGGTTTGGATTCGGGAATGTGAGCCTGGTTAAGGGGAAATCTAGAAGCTTTTGCGAGCGCGAGTGCTTGGGTGATTGTGGGTGCGTTGGGTTGAGTTTCGAAAAGCAGAGTGGGTTATGCAAGAAATTTTACGGTTCGCTTTCGGATTTTCGGAATTTAACCGCCGATGGTGAGAGTGAGGTTTTGCATGTTAGGTTTCCGAGCGGGGGATCTGGGAGGAAGGTGTTTGATTGGAAGGTTTTGAGTGGGGTTATTATTGGGTCGGTTGCGGTTTTGGGGGTGGTGGTGGTGACATTGTTGGTGATGGTGAAGAGGAGGGTTGTGGGGAAGAAATTGGAAGAGGATGAGGAAGATGGGTTTGTGGGTGTGTTGAATTTGCGTGTGTTTTCTTACAAGGAACTTCAGTTGGCGACTCGGGGGTTTTCAGAGAAGATCGGGCACGGAGGGTTTGGGACGGTGTTTCAGGGGGAGTTGAGTGATGCTTCCGTTGTGGCTGTGAAGAGGTTGGAGAGGCCAGGGAGTGGGGAGAAGGAGTTCAGGGCGGAGGTCTCCACGATTGGGAATATTCAACACGTGAATCTCGTGCGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACCGGCTTCTTGTTTATGAGTATATGCAGAACGGTGCTCTGAGTGTTTATTTGAGGAAGGAAGGGCCTAGTCTGAGTTGGGATGTTAGGTTCAGGGTGGCCGTTGGCACTGCTAAGGGGATTGCTTATTTACACGAGGAATGTAGATGTTGCATCATACATTGTGATATAAAGCCAGAGAACATTCTTTTGGACGGTGATTTCACTGCCAAGGTTTCTGATTTTGGGTTAGCAAAGCTGATTGGGAGGGACTTCAGTAGGGTGTTGGCGACTATGAGGGGAACGTGGGGGTATGTTGCACCGGAGTGGATTTCTGGTGTGGCAATTACAACCAAGGCAGATGTTTACAGCTACGGAATGACAATGCTGGAGCTGATCGGCGGTCGTAGGAACGTGGAGGCAGTGCCATCTGGCGGAGGAGAGAGTGGTACTGAAAGTGGAGGGAAGTGGTTCTTCCCACCATGGGCAGCGCAGCAGATAATAGAGGGAAATTTTGGTGAAGTGATTGATAAGAGACTTGGTAATGTGTATAACATTGAGGAGGCTAGAAGGGTTGGTTTGGTGGCAGTTTGGTGCATTCAAGATGATGAAGCAATGAGACCTACAATGGGTATGGTGGTGAAGATGTTGGAAGGGTTGGTGGAGGTAAGTGTTCCTCCACCTCCAAAGTTGCTTCAAGCTCTGGTTACTGGGGATTCATTTCATGGGGTGAAGGCTATTTCAGGCAATGGTTTGTCTACTGGTGGAAGCTTATCAGATGGCAACTTGGAAGTTTCAACTGCTGATTCTGAATCATATACAGGGAATGTTTTTTCTCCATTAGATGTCAATGTCAATGCCAATGTCAGTGTTCGATAA 2493 0.5287 MFLFFLLFILILHTSSSSATILLQGNATLQSPNNTFQLGFFNFFRGPGPGPPKFYLAIRRTSLPNPNTIWVANRLHPSPTQAASSLELTPTGKLLLTHFNNTLWTAAGAATANLTLKLHDSGNLVLLTSDGVVSWQSFDSPSDTWLPGMNLTRFNSLTSWRTETDPSPGLYTLRLKPSFYGEFELVFNDTVSYWSTGNWSNGTFLNIPEMTIPYLYAFHFAAPFSPAAAFGFSERAIETSFRPPTMFRLEPFGQVKQYSWNSQSGSWQMFWFKPESVCQVRGLCGGFGVCTGDTSKFCECVSGFEPLDGHGWGSGDYSQGCHRVDAGCDGGDGFEDLGAVRFGFGNVSLVKGKSRSFCERECLGDCGCVGLSFEKQSGLCKKFYGSLSDFRNLTADGESEVLHVRFPSGGSGRKVFDWKVLSGVIIGSVAVLGVVVVTLLVMVKRRVVGKKLEEDEEDGFVGVLNLRVFSYKELQLATRGFSEKIGHGGFGTVFQGELSDASVVAVKRLERPGSGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTMLELIGGRRNVEAVPSGGGESGTESGGKWFFPPWAAQQIIEGNFGEVIDKRLGNVYNIEEARRVGLVAVWCIQDDEAMRPTMGMVVKMLEGLVEVSVPPPPKLLQALVTGDSFHGVKAISGNGLSTGGSLSDGNLEVSTADSESYTGNVFSPLDVNVNANVSVR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6640g00004 830 Pfam Protein kinase domain 482 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00004 830 SMART serkin_6 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00004 830 Gene3D Transferase(Phosphotransferase) domain 1 554 763 - -
Vium6640g00004 830 SMART blect_4 20 141 IPR001480 -
Vium6640g00004 830 PIRSF SRK 1 808 IPR024171 GO:0004674
Vium6640g00004 830 CDD B_lectin 22 141 IPR001480 -
Vium6640g00004 830 ProSiteProfiles Bulb-type lectin domain profile. 14 139 IPR001480 -
Vium6640g00004 830 FunFam Receptor-like protein kinase 4 441 553 - -
Vium6640g00004 830 FunFam S-receptor-like kinase 5 554 764 - -
Vium6640g00004 830 CDD PAN_AP_plant 324 407 - -
Vium6640g00004 830 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Vium6640g00004 830 ProSiteProfiles Protein kinase domain profile. 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00004 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 199 IPR036426 -
Vium6640g00004 830 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Vium6640g00004 830 CDD STKc_IRAK 485 758 - -
Vium6640g00004 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Vium6640g00004 830 Gene3D - 15 138 IPR036426 -
Vium6640g00004 830 PANTHER OS07G0415500 PROTEIN 4 768 - -
Vium6640g00004 830 SUPERFAMILY Protein kinase-like (PK-like) 463 756 IPR011009 -
Vium6640g00004 830 Pfam D-mannose binding lectin 68 153 IPR001480 -
Vium6640g00004 830 Gene3D Phosphorylase Kinase; domain 1 446 553 - -
Vium6640g00004 830 ProSiteProfiles PAN/Apple domain profile. 328 406 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6640g00004 Vium-Chr6640 38181 41031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6640g00004 469 765 Receptor kinase-like Gene Family AT5G20050 47.419 9.45e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium6640g00004 Pkinase 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6640g00004 - - vum:124843753 1352.42