Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6640g00003 ATGTTCCTCTTTTTTCTTCTCTTCATTCTCATTCTCCACACTTCCTCCTCCTCCGCCACCATCCTTCTCCAAGGCAACGCCACTCTGCAAAGCCCCAACAACACTTTCCAACTGGGCTTCTTCAATTTCTTCCGAGGCCCGGGCCCGGGCCCGCCGAAATTCTACCTCGCCATCCGCCGCACCTCTTTGCCCAACCCCAACACCATTTGGGTCGCCAACCGCCTCCACCCCTCCCCCACCCAAGCCGCTTCATCCCTTGAACTCACCCCAACCGGTAAGTTACTCCTAACCCACTTCAACAACACTCTCTGGACCGCCGCCGGCGCCGCCACCGCCAACCTCACGCTCAAGCTTCACGATTCCGGAAACCTCGTCCTCCTCACTTCCGACGGCGTCGTTTCATGGCAGAGCTTCGATTCCCCCTCGGACACGTGGCTCCCCGGCATGAACCTCACGCGCTTCAACTCGCTCACCTCTTGGCGCACGGAGACGGACCCTTCCCCGGGGCTTTACACCCTGCGGTTGAAGCCATCCTTCTACGGCGAGTTCGAGCTCGTCTTCAACGAGACCGTGTCGTACTGGTCCACCGGGAACTGGAGCAATGGGACATTCCTCAACATCCCAGAGATGACCATCCCCTACCTCTACGCCTTTCACTTCGCCGCGCCGTTCTCCCCCGCCGCGGCCTTCGGTTTCTCCGAACGCGCCATCGAGACGAGCTTCCGACCGCCGACGATGTTCCGCCTGGAGCCCTTCGGACAGGTCAAGCAGTACTCGTGGAACAGCCAATCGGGGTCCTGGCAGATGTTTTGGTTCAAGCCGGAGAGTGTGTGCCAGGTTCGGGGACTCTGCGGGGGGTTCGGGGTTTGCACTGGGGACACATCCAAATTCTGTGAGTGTGTGAGTGGGTTTGAGCCTTTGGATGGTCATGGGTGGGGTTCTGGTGATTACTCTCAAGGTTGTCACCGTGTGGACGCGGGGTGTGACGGGGGTGATGGGTTTGAAGATCTTGGTGCTGTGAGGTTTGGATTCGGGAATGTGAGCCTGGTTAAGGGGAAATCTAGAAGCTTTTGCGAGCGCGAGTGCTTGGGTGATTGTGGGTGCGTTGGGTTGAGTTTCGAAAAGCAGAGTGGGTTATGCAAGAAATTTTACGGTTCGCTTTCGGATTTTCGGAATTTAACCGCCGATGGTGAGAGTGAGGTTTTGCATGTTAGGGTTCCGAGCGGGGGATCTGGGAGGAAGGTGTTTGATTGGAAGGTTTTGAGTGGGGTTATTATTGGGTCGGTTGCGGTTTTGGGGGTGGTGGTGGTGACATTGTTGGTGATGGTGAAGAGGAGGGTTGTGGGGAAGAAATTGGAAGAGGATGAGGAAGATGGGTTTGTGGGTGTGTTGAATTTGCGTGTGTTTTCTTACAAGGAACTTCAGTTGGCGACTCGGGGGTTTTCAGAGAAGATCGGGCACGGAGGGTTTGGGACGGTGTTTCAGGGGGAGTTGAGTGATGCTTCCGTTGTGGCTGTGAAGAGGTTGGAGAGGCCAGGGAGTGGGGAGAAGGAGTTCAGGGCGGAGGTCTCCACGATTGGGAATATTCAACACGTGAATCTCGTGCGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACCGGCTTCTTGTTTATGAGTATATGCAGAACGGTGCTCTGAGTGTTTATTTGAGGAAGGAAGGGCCTAGTCTGAGTTGGGATGTTAGGTTCAGGGTGGCCGTTGGCACTGCTAAGGGGATTGCTTATTTACACGAGGAATGTAGATGTTGCATCATACATTGTGATATAAAGCCAGAGAACATTCTTTTGGACGGTGATTTCACTGCCAAGGTTTCTGATTTTGGGTTAGCAAAGCTGATTGGGAGGGACTTCAGTAGGGTGTTGGCGACTATGAGGGGAACGTGGGGGTATGTTGCACCGGAGTGGATTTCTGGTGTGGCAATTACAACCAAGGCAGATGTTTACAGCTACGGAATGACAATGCTGGAGCTGATCGGCGGTCGTAGGAACGTGGAGGCAGTGCCATCTGGCGGAGGAGAGAGTGGTACTGAAAGTGGAGGGAAGTGGTTCTTCCCACCATGGGCAGCGCAACATTGTGTTGTTTTCATTCCTCCCATATATGAGATCAATTTGAATATTCTTCTCCTCTATAACATGGGAAATTTAGTGGGTGGAAGCAGGGTTGATGACAGAGCACAGAGTGAAAGAGCGAAAAAGGAGAAAGGATAA 2247 0.5385 MFLFFLLFILILHTSSSSATILLQGNATLQSPNNTFQLGFFNFFRGPGPGPPKFYLAIRRTSLPNPNTIWVANRLHPSPTQAASSLELTPTGKLLLTHFNNTLWTAAGAATANLTLKLHDSGNLVLLTSDGVVSWQSFDSPSDTWLPGMNLTRFNSLTSWRTETDPSPGLYTLRLKPSFYGEFELVFNETVSYWSTGNWSNGTFLNIPEMTIPYLYAFHFAAPFSPAAAFGFSERAIETSFRPPTMFRLEPFGQVKQYSWNSQSGSWQMFWFKPESVCQVRGLCGGFGVCTGDTSKFCECVSGFEPLDGHGWGSGDYSQGCHRVDAGCDGGDGFEDLGAVRFGFGNVSLVKGKSRSFCERECLGDCGCVGLSFEKQSGLCKKFYGSLSDFRNLTADGESEVLHVRVPSGGSGRKVFDWKVLSGVIIGSVAVLGVVVVTLLVMVKRRVVGKKLEEDEEDGFVGVLNLRVFSYKELQLATRGFSEKIGHGGFGTVFQGELSDASVVAVKRLERPGSGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTMLELIGGRRNVEAVPSGGGESGTESGGKWFFPPWAAQHCVVFIPPIYEINLNILLLYNMGNLVGGSRVDDRAQSERAKKEKG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6640g00003 748 SMART serkin_6 479 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00003 748 PANTHER OS07G0415500 PROTEIN 4 703 - -
Vium6640g00003 748 SMART blect_4 20 141 IPR001480 -
Vium6640g00003 748 CDD B_lectin 22 141 IPR001480 -
Vium6640g00003 748 ProSiteProfiles Bulb-type lectin domain profile. 14 139 IPR001480 -
Vium6640g00003 748 PIRSF SRK 1 708 IPR024171 GO:0004674
Vium6640g00003 748 CDD PAN_AP_plant 324 407 - -
Vium6640g00003 748 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Vium6640g00003 748 ProSiteProfiles PAN/Apple domain profile. 328 406 IPR003609 -
Vium6640g00003 748 FunFam Receptor-like protein kinase 4 441 553 - -
Vium6640g00003 748 Gene3D - 15 138 IPR036426 -
Vium6640g00003 748 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Vium6640g00003 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Vium6640g00003 748 Pfam Protein kinase domain 482 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00003 748 SUPERFAMILY Protein kinase-like (PK-like) 463 680 IPR011009 -
Vium6640g00003 748 ProSiteProfiles Protein kinase domain profile. 479 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00003 748 Pfam D-mannose binding lectin 68 153 IPR001480 -
Vium6640g00003 748 FunFam Os07g0541700 protein 555 640 - -
Vium6640g00003 748 Gene3D Phosphorylase Kinase; domain 1 446 553 - -
Vium6640g00003 748 Gene3D Transferase(Phosphotransferase) domain 1 554 698 - -
Vium6640g00003 748 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 199 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6640g00003 Vium-Chr6640 34837 38221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6640g00003 469 677 Receptor kinase-like Gene Family AT5G20050 52.273 7.39e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium6640g00003 Pkinase 9.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6640g00003 - - vum:124843753 1422.14