Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6640g00001 ATGTCTTCTCCATATCCCCCTAGCCGGCGATCCGGCTCCGACTACAGCAGAACGCCGGGAAGGGTGCCCCCTTCTCCGGGCTACGCCTCGTCCGAGCTCAGCACCTCCACAATCTCCGAGCGCCAGAACCCCGTCGTCGCCGCCGCAAGGTCCTTCACCGGAATGTTCGCCGCGTGCTTCGCGTCCCCGGAATCCGACAACTCCAGGAGCCTCGGGGATTCCGAGGAGTTTAAGTCTTCTTCCACTGCATCGAATGGCTCCAGAGCTGGTTCAAGAGCTGGTAGTCAGAGAGGGCGTAACTCAAATGGAGGTATGAACATCAGTTCATACAACATAGTACAAAGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTGTACAAGGCAAAACTCTTGGATGGGACTGTTGTTGCAGTAAAGCGTGCGAAGAAGAGTCTATATGAGAAACATTTGGGAGTGGAGTTTCAGAGCGAGATCCAAACACTATCCAAGGTGGAACATTTGAACTTGGTCAAGTTGTATGGATATTTGGACCAAGGTGATGAAAGGATCATTGTTGTTGAGTATGTTCCAAATGGAACCCTCAGAGAACATTTAGATTGCATTCATGGGTGCGTTCTGGACCTTGCTGCACGTTTGGATGTAGCAATTGATGTTGCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAAAATTTTCGAGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCCGCAGACAGTGACTCTGGCATGACACATGTCTCCACCCAAGTCAAAGGAACAGCTGGTTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAGAAGAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGCAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAATGGGCTATGAAGAGGTTCATGGAGGAAGATGCTATCTCAGTCTTGGACCCAAGACTGGATCAGACTGCCGCAAACACTTTGGCACTGCATAAGATTCTGGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGGCCTAGCATGAAAAGATGTGCCGAAATCCTTTGGTCCATCCGCAAGGATTTCAGAGAGCAGTTATCAGCTTCAAACTTCCGCTCATTTTCCACTTCTTCCCAAAGGAGCACCTCACTGAGAGAGTGA 1326 0.4713 MSSPYPPSRRSGSDYSRTPGRVPPSPGYASSELSTSTISERQNPVVAAARSFTGMFAACFASPESDNSRSLGDSEEFKSSSTASNGSRAGSRAGSQRGRNSNGGMNISSYNIVQRKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSLYEKHLGVEFQSEIQTLSKVEHLNLVKLYGYLDQGDERIIVVEYVPNGTLREHLDCIHGCVLDLAARLDVAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFMEEDAISVLDPRLDQTAANTLALHKILELALQCLAPRRQNRPSMKRCAEILWSIRKDFREQLSASNFRSFSTSSQRSTSLRE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6640g00001 441 MobiDBLite consensus disorder prediction 1 15 - -
Vium6640g00001 441 Gene3D Transferase(Phosphotransferase) domain 1 213 434 - -
Vium6640g00001 441 Gene3D Phosphorylase Kinase; domain 1 97 212 - -
Vium6640g00001 441 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 424 - -
Vium6640g00001 441 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00001 441 PANTHER OS01G0750732 PROTEIN 52 426 - -
Vium6640g00001 441 SUPERFAMILY Protein kinase-like (PK-like) 110 413 IPR011009 -
Vium6640g00001 441 CDD STKc_IRAK 141 410 - -
Vium6640g00001 441 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 94 212 - -
Vium6640g00001 441 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Vium6640g00001 441 MobiDBLite consensus disorder prediction 66 109 - -
Vium6640g00001 441 Pfam Protein kinase domain 140 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00001 441 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6640g00001 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vium6640g00001 441 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6640g00001 Vium-Chr6640 3130 6610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6640g00001 123 403 Receptor kinase-like Gene Family AT1G79620 46.316 3.29e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vium6640g00001 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6640g00001 - - gmx:100792034 689.878