Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium663g00003 ATGGGTAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAGTGGGTTGGTGAAGAAAGCTAGAGAACTGTCTATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGCCAAGCTTTATGACTATGCCAGTTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGGTCAAAGAGGACCATCATCAGTTAATGAACCCTGCTTCAGAAATCAAGTTTTGGCAGAGAGAAGTAGCAAGTTTGAGGCAACAAGTGCAGTACATGCAAGAATGTTACAGGCAAATGATGGGCGAACAACTTTCTGGTTTGCATATTAAGGAGTTGGGGAATCTGGAAAATCGACTGGAGAGAAGTTTGAAGGGTGTTCGCATGAAAAAGGTATCATCCTTCAAAGTCAAAGCAAACCAAAACTAG 459 0.4205 MGRGKIVIRRIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTAKLYDYASSSLKSVIDRYNKVKEDHHQLMNPASEIKFWQREVASLRQQVQYMQECYRQMMGEQLSGLHIKELGNLENRLERSLKGVRMKKVSSFKVKANQN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium663g00003 152 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium663g00003 152 Pfam K-box region 84 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium663g00003 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vium663g00003 152 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vium663g00003 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Vium663g00003 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 ProSiteProfiles K-box domain profile. 86 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium663g00003 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium663g00003 152 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium663g00003 Vium-Chr663 50504 64501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium663g00003 1 141 MADS-box Gene Family AT4G37940 73.050 2.36e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium663g00003 K-box 5.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium663g00003 K09264 - gmx:100779647 249.595