Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium663g00002 ATGGAGACCAGCCAGGATTCGTGGGAGAAAACAAAAGTGCGATCTTCTTTCGAACGCGCTACTGAAGGGTTCCTCGGCGACCAGGTCAAGAAACACGGTGGAAGCCTCCCGGAGCCTTTCGTCCGGCGATGCACGAGGTCTATCATGGAAGGGCTCAAACATATTCACGAGCAAGGTTTCGTTCACTTCGACGTGAAGCTTCAGAACGTTCTCGTTTCTGACGACGAGGTGAAAATCGCGGACTTTGGACTCACCAAGGAGAAGGGTAAGAAACAAGGGAAGTGTGAGTTCAGGGGAACATCGTTGTTTATGTCGCCAAAATCGGTGAAAAATAATGAATATGAGCCGTTAGCGGATATTTGGGCCTTGGGATGCACCGTCGTGGAGATGGTGACCGGAAAACCCGTGTGGGATGTTAGCAACGGTTCCAGTATTTGGTCATTGATTATTCGGATTGGAGTGGGAGAAGAATTGCCAAAGATTACAGAAGAATTGTCGGAAGAGGGGAAGGACTTTTTGGAGAAGTGCTTTGTTAAGGATCCCAAGAACAAGTGGAGCGTTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCGTTTGAGAAAGTTCATCAACCGTTACTGTCGCCGTCACCGAGGACCCACTTCGATTTTCCTGACTGGGCTTCCACCATAATGGCTTCGCTCCCGTCATCCCTAGATTCCGATGAGCACTCTGGGTGGACAAGTTCTCCGGAGAGTCGTCTCCAGCAGCTTGTCACTGATAAGACACCAGAGAATTGGTCAGGATTAGATGGCTGGATCGGCGTTAGGTGA 825 0.4933 METSQDSWEKTKVRSSFERATEGFLGDQVKKHGGSLPEPFVRRCTRSIMEGLKHIHEQGFVHFDVKLQNVLVSDDEVKIADFGLTKEKGKKQGKCEFRGTSLFMSPKSVKNNEYEPLADIWALGCTVVEMVTGKPVWDVSNGSSIWSLIIRIGVGEELPKITEELSEEGKDFLEKCFVKDPKNKWSVEMLLKHPFIKVDSFSFEKVHQPLLSPSPRTHFDFPDWASTIMASLPSSLDSDEHSGWTSSPESRLQQLVTDKTPENWSGLDGWIGVR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium663g00002 274 SUPERFAMILY Protein kinase-like (PK-like) 17 247 IPR011009 -
Vium663g00002 274 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 17 236 - -
Vium663g00002 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 60 72 IPR008271 GO:0004672|GO:0006468
Vium663g00002 274 Pfam Protein kinase domain 17 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium663g00002 274 SMART serkin_6 8 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium663g00002 274 Gene3D Transferase(Phosphotransferase) domain 1 23 217 - -
Vium663g00002 274 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium663g00002 Vium-Chr663 42336 44610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium663g00002 17 274 MAP Kinase Kinase Kinase AT4G36950 49.425 3.85e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium663g00002 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium663g00002 - - vum:124819620 568.155