Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium663g00001 ATGGGGAGAGGAAAGATTCCCATTCAAAGAATCGAAAATTCGACGAACCGGCAAGTAACTTTCTGTAAGAGAAGAAATGGGTTGATGAAGAAAACTAGAGAGCTATCTATTCTTTGTGATGCAGAAGTTGGAGTCATTGTGTTTTCCTGCACGGGCAAACTTTATGAGTATTCAAACACCAGCATGCAATCAATCATTGATCGCTTTAACAAGCTCAACGAGGACCATGGTTGGATAATGGATCCTGCTTCATCTGTCAAGTTTTGGCAGAGAGAAGCAGCATGCTTAAGGCAACAACTAGAACGTTTGCAAGAAAGCAGCAGGCAACTGATGGGTGAAGAACTTTCTGATTTGAATATGAATCAGCTAAAGGATCTGGAAAATAAACTCCAAATTGGTTTGAGTAATGTTCAAATAAAAAAGGATCAAATGCTTAAAGATGAGATCAAAGTATTGCAACAAAAGGGAATCTTCATTCATCAAAAAAATGAAGAACTTCGTACGAAGATAAACCTTTTACATGAAAATAATTCAGAACTACAGAAGGTTATTGAAGCAAGGGATATGGAAAAAGAAAAGGCAACATGCTATCAGCAATGGATATGA 606 0.3729 MGRGKIPIQRIENSTNRQVTFCKRRNGLMKKTRELSILCDAEVGVIVFSCTGKLYEYSNTSMQSIIDRFNKLNEDHGWIMDPASSVKFWQREAACLRQQLERLQESSRQLMGEELSDLNMNQLKDLENKLQIGLSNVQIKKDQMLKDEIKVLQQKGIFIHQKNEELRTKINLLHENNSELQKVIEARDMEKEKATCYQQWI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium663g00001 201 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium663g00001 201 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium663g00001 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vium663g00001 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vium663g00001 201 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vium663g00001 201 Coils Coil 163 183 - -
Vium663g00001 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Vium663g00001 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 Coils Coil 86 113 - -
Vium663g00001 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium663g00001 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium663g00001 Vium-Chr663 5033 21962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium663g00001 1 188 MADS-box Gene Family AT4G37940 52.128 9.50e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium663g00001 K-box 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium663g00001 K09264 - gmx:100779119 279.641