Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6634g00002 ATGTTATGCTTCTTCAGTGAAGCTATGATGGATGAAAGGAGACAGAATATAATCTCTGCTGTATCAGTGATTGCACTGGTTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGGCTTCTTCCTTATATTTGGTGCCGGTGTTGTTGTTATTCTTGCAGTCTTTGCTTATGTTCTCCTCAGCAAAAGGTTCAACCGCAGGAGGAGGCTATTGGAGTCACAGTTGAAATCCGAAGGCCGAGAACTTCGCATGGAGTACAGTTTCTTGAAGAAAGTTGCCGGCGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACAGATGGGTTTCAGGCACTGATTGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAATGATGGCACTTCGGTTGCCGTCAAACGAATCGATGGAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGTGTGCACCATGTGAACCTGGTGAGGCTGTTGGGCTACTGTAATGCTCCGACAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCTTTGGATTGTTGGATTTTTCCCAAAAGGTTATCTCAGAGGCGCCTTGGTGGGTGCTTGCCGTGGAATTTAAGGTACAAAGTTGCCATTGATGTTGCCAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAAGATCTTGCACCTTGACGTAAAGCCAGAAAATATACTGTTGGACGAGAATTATAGAGCACTTGTTTCAGATTTTGGTTTGGCAAAGCTTTTTGGAAAGGATGAAAGCCAAAAGGTTGTGTCTGCCATTAGAGGAACAAGAGGGTACTTGGCACCTGAGTGGCTCTTAGAGCAAGGTATTTCGGATAAGACAGACATATATAGTTATGGGATGGTTCTTCTGGAGATTGTCGGAGGCAGAAAAAACGTTTGCTTCGTAGATGATGTAAAGGCCAAGTCCAAAAGAAAATGCCAGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAAGTCATGGAAATTGTTGATCCTAGGTTGTTGGAAGGTGGGAGTGTTGATGAGAGGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAACAGAAGCCAAGATCAAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACCAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGACAGTGCAACAGATAGCAGTAGCTTGCAAAGGTTGGACCTTATATCAAATCGAAGAACAGAAAGCGAAGTGGAGTGTTCATCTACCTACTCCCATGCTACCACTGTTTTGTCTGGAAGATAG 1380 0.4435 MLCFFSEAMMDERRQNIISAVSVIALVILIIVARVTLKLSKGFFLIFGAGVVVILAVFAYVLLSKRFNRRRRLLESQLKSEGRELRMEYSFLKKVAGVPIKFRYKELEEATDGFQALIGRGASASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYEYVSNGSLDCWIFPKRLSQRRLGGCLPWNLRYKVAIDVAKGLAYLHHDCRSKILHLDVKPENILLDENYRALVSDFGLAKLFGKDESQKVVSAIRGTRGYLAPEWLLEQGISDKTDIYSYGMVLLEIVGGRKNVCFVDDVKAKSKRKCQYFPKIVNEKVREGKVMEIVDPRLLEGGSVDERQVKTLVYVALWCVQQKPRSRPSMAQVVDMLEGRVRVELPPDTRMVLVDFLCVDDSATDSSSLQRLDLISNRRTESEVECSSTYSHATTVLSGR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6634g00002 459 ProSiteProfiles Protein kinase domain profile. 112 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6634g00002 459 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6634g00002 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vium6634g00002 459 FunFam Putative receptor-like protein kinase 188 404 - -
Vium6634g00002 459 FunFam Putative receptor-like protein kinase 79 187 - -
Vium6634g00002 459 Pfam Protein kinase domain 117 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6634g00002 459 SUPERFAMILY Protein kinase-like (PK-like) 93 397 IPR011009 -
Vium6634g00002 459 Gene3D Phosphorylase Kinase; domain 1 75 187 - -
Vium6634g00002 459 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Vium6634g00002 459 Gene3D Transferase(Phosphotransferase) domain 1 188 404 - -
Vium6634g00002 459 PANTHER OS07G0415500 PROTEIN 48 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6634g00002 Vium-Chr6634 20192 21844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6634g00002 10 408 Receptor kinase-like Gene Family AT5G20050 63.184 1.63e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium6634g00002 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6634g00002 - - vra:106757544 849.736