Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6633g00003 GCCGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCCAGTGATAGTATGCACATTGGAATTCTTGCCGCAGCGGCTCATGCAGCCGCAAACAGTAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCGGTGTACAGCCACCAACCGTCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACGAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAGCTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCCGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATCGAACCAGTAACTGCTCCATTTTTCCTCTGCCCGCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGACTTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGAAATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACGTGCAGCAACATCCTGCACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCCTTACCGGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCCGCTCCACAAATTTCTCAGTCAAACAATGTAGCCTTCAATACTCACAGACTACTTCAGACTGCTCAACAGCTGGATCAACTTCAGAAGCTACCATCTACATCTAGCACATTAGGAGCAGTCCTGCCACCACAGCAACAGTTGGGTGATATCAGTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATACCTCAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAGTTTGATCCAGTCCCCTATCCCTGATCATGTTCAACAATTACAGATGTCCGACAATCAGATTCAGTTGCACTTGTTACAGAAGCTTCAACAACAAAAACAAACGCACTTGGCACAGCAAACAGTGTTGCAGCAGCCTACTCAGCTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCACTAACACCTGGTCAAGTTCTAGAAATACCTCCTATGCTTCAAAATTCACTGCCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAGTATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCACATGGGACTTCTTCCTACCCCTACTACAAATAACCAACTTTCTGCTGCTGGCAGTGGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCATCTTGCTCGACCTCGCCTTCTGCAAATAACTGTGCCAGTGCACTTCCACCATTGATAAATTCTCGATTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAACCGAAGTCTGAAGTTAAACCTTCTCTGAATATTTCCAAAAGTCAGAATCAAGGGCATTTTGGCCTTCAGTCATACTTGAATGGTAGTGCTGTCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAATAATCCATTAGCTTACAATCCACATCCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCCATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAACTTCTCTTCAGAAGCCCTACTTGGTAATTATGAAAATAACAGAGATGCTCACCAGGAACTTTCATCTTCAATGGTTTCACAGTCATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTTTTGAATAGGGGTGCATGGGCTCCACCAGCAGCACCGCCTCCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACGTATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACGCGGTATTCAGGTTATGAAGAGCTTAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGGCAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTCGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGCGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACCTAA 2715 0.4464 AGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANSSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDDLSDFDNIFKRTMPWLGDEMCMKDPQGLPGLSLAQWMNVQQHPALASSLQPNFAPSLPGSILQNIPGADISRQLGFSAPQISQSNNVAFNTHRLLQTAQQLDQLQKLPSTSSTLGAVLPPQQQLGDISQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQNHQMHRSLSQNPSQQQTIIGQSQQQSLIQSPIPDHVQQLQMSDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLSRALTPGQVLEIPPMLQNSLPEANSISNQITKANFQNSIQFPQQPKLQQQQPGLLSEMSGHMGLLPTPTTNNQLSAAGSGILNGAAGAGQSVITDDIPSCSTSPSANNCASALPPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDLQPKSEVKPSLNISKSQNQGHFGLQSYLNGSAVHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHPMLFRDNSQDGEVQADARGHIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEALLGNYENNRDAHQELSSSMVSQSFGVPDMAFNSIDSTIDDSSFLNRGAWAPPAAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6633g00003 904 Gene3D - 787 881 - -
Vium6633g00003 904 Pfam Auxin response factor 47 130 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium6633g00003 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 881 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium6633g00003 904 FunFam Auxin response factor 85 156 - -
Vium6633g00003 904 ProSiteProfiles PB1 domain profile. 792 876 IPR000270 GO:0005515
Vium6633g00003 904 Gene3D - 85 156 - -
Vium6633g00003 904 FunFam Auxin response factor 787 881 - -
Vium6633g00003 904 MobiDBLite consensus disorder prediction 343 372 - -
Vium6633g00003 904 SUPERFAMILY CAD & PB1 domains 805 870 - -
Vium6633g00003 904 Pfam AUX/IAA family 792 877 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6633g00003 Vium-Chr6633 21204 25967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6633g00003 1 263 B3 DNA Binding Superfamily AT1G19220 69.173 9.47e-106 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6633g00003 - - vum:124843738 1659.81