Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6631g00012 ATGCGGGATTGCAGAGAAATTTGGTTATTTTTCTGTGGTTTAACAATCTTGCCCTTGGTATGTTTTTCTGCCAACTTTGTTCCTCTGGATAATTACCTTATAGACTGTGGAGCATCAACCGATACTGTTATAGATAACCGCAATTTCACAGCCGATAGTTTCTACAATAATTTCCTTTCCACCCAACAAGATGTTCTTGCAAGCACCTCCTTAAAATCAATAGCTTCCTCCAGTGATTCGCCTCTTTACGCAACCGCAAGAATTTTCACTGCACCCTCAAAGTACACGTTTCCGATTAAGAAAAGGGGGAGACATTGGATCCGGCTTTATTTCTTTCCATTTGCATATGAGAAGTACGATTTGAGTGCAGCAAATTTCGCTGTTTCCACCCAGGACTATAATCTTGTGAGTGATTTTAGTGTGCAGAAAAACCCTGTTATGAAGGAGTACTCTTTAGATGTAAACTCAGACACCCTTGTGATCACCTTTGCCCCTTCTGCAAATTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCGGTTCCTGATGGCCTCATTGTTGATAATGGTTTCTCCCTATATCCATCAGGGTCCTACTCTGGCTTGTTGACTAAAGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAAGTGTCTCCTCTGGCAATGACACGCTTCAACGAACTTGGGTTGCTGACGAAAAATTCCTCATACAACCTAACTTGGCCACTAATTTTTCAAATATCGGTGCTGTGAAATATGTAAATGGTGGTCCAACAGCAAATACTGCTCCACCTTCTGTCTATGGTACTCTAACAAGGATGAACTCAGCTGGTGATCCCCGAAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATACTCAGCAAAAGCCTCAATGAGCTCTACTTTAATGTTTACATTAATTCCTTGTTGGCTGCTAAGGATCTTGATCTGAGCACCGAAAATGATAATGTTTTGGCTACTCCATTATGCAAGGACTTGGTTACAGCCCCATCTGCCAGCACCAAAATGCTTGTAAGCATTGGCCCTTCTACTGTGAACAATAATTATCCTAATGCTATTTTGAATGGACTGGAGATAATGAAAATGAACAATTCTGCGAGCAGTTTCAGCTCATCAACTGCGCCTGGGACAGGTTCTTCCGGTTCAGGTTCTAAAAAGGTTGGCTTGATAGTAGGTGTGAGTCTCGGGGCATTTTTTGCAGTGGTTATGGTTCTTGTTTTCTTTCTACTATGCAGGAAAAGGAGACGTTTGGAAAAAGAAAAACAAGGGCATTCAAAGACATGGTTTCCCGTATCAATCAATGATGGAACTTCCCACACCATGGGAAGTAAATACTCTACTGGCACATCAGGAAGTGCTGCTTCAAATTTTGGGTATCGTTTCCCTTTTGTGACAGTTCTGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGAATTGGTGGCTTTGGAAAAGTATACAAGGGAGAGTTAAATGACGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTAGCAGAATTCCGAACTGAAATTGAGATGCTGTCACAGTTCCGCCACCGCCATCTGGTATCACTGATTGGATATTGTGATGAAAAGAACGAGATGATTTTGATATATGAATATATGGAAAAGGGAACTCTCAAAAGTCATTTGTATGGTTCAGGTCTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATTTGCATTGGAGCAGCTAGAGGACTGCATTACCTTCACACAGGATATGCTAAAGCCGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTGCTTGATGACAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCAAAGACAGGGCCTGAAATTGATCAGACACATGTGAGCACCGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAGTATTTCAGGAGGCAACAACTTACAGAAAAGTCAGACGTGTATTCATTTGGGGTGGTTCTGTTTGAGGTTCTTTGCGCTAGACCTGTTATAGATCCAACCCTTCCTAGAGAAATGGTGAACTTGGCAGAATGGACTATGAAATGGCAGAAAAGAGGGCAATTGGAGCAGATAATAGATCCAACGCTTGCTGGGAAAATCAGACCAGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGTTTGGCTGACTTTGGTGTTGACAGGCCTTCTATGGGAGATGTGTTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTTGTTCAAGGTGACCCTGAAGAAAACAGTACTAATATGATCGGTGAACTGTCACCACAGCTCAACAATTTCGACCATGAAGTTAGTGTTTCCGCTGCACAATTTGAAGCTTCAAGTCTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTATTCTCACAGCTGGTGAAATCTGAAGGGAGGTGA 2514 0.426 MRDCREIWLFFCGLTILPLVCFSANFVPLDNYLIDCGASTDTVIDNRNFTADSFYNNFLSTQQDVLASTSLKSIASSSDSPLYATARIFTAPSKYTFPIKKRGRHWIRLYFFPFAYEKYDLSAANFAVSTQDYNLVSDFSVQKNPVMKEYSLDVNSDTLVITFAPSANSIAFVNAIEVVSVPDGLIVDNGFSLYPSGSYSGLLTKALETVFRVNMGGPSVSSGNDTLQRTWVADEKFLIQPNLATNFSNIGAVKYVNGGPTANTAPPSVYGTLTRMNSAGDPRSNFNVTWQFDVEPQFQYLVRLHFCDILSKSLNELYFNVYINSLLAAKDLDLSTENDNVLATPLCKDLVTAPSASTKMLVSIGPSTVNNNYPNAILNGLEIMKMNNSASSFSSSTAPGTGSSGSGSKKVGLIVGVSLGAFFAVVMVLVFFLLCRKRRRLEKEKQGHSKTWFPVSINDGTSHTMGSKYSTGTSGSAASNFGYRFPFVTVLEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDDNLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWTMKWQKRGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQLNNFDHEVSVSAAQFEASSLDDLSGVSMSRVFSQLVKSEGR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6631g00012 837 PANTHER OS07G0166700 PROTEIN 484 774 IPR045272 GO:0004714|GO:0006468
Vium6631g00012 837 SUPERFAMILY Protein kinase-like (PK-like) 477 768 IPR011009 -
Vium6631g00012 837 FunFam receptor-like protein kinase FERONIA 461 572 - -
Vium6631g00012 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00012 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00012 837 FunFam Receptor-like protein kinase FERONIA 206 388 - -
Vium6631g00012 837 Pfam Protein tyrosine and serine/threonine kinase 502 695 IPR001245 GO:0004672|GO:0006468
Vium6631g00012 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vium6631g00012 837 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Vium6631g00012 837 FunFam Putative receptor-like protein kinase 31 182 - -
Vium6631g00012 837 Gene3D - 31 181 - -
Vium6631g00012 837 Gene3D - 205 388 - -
Vium6631g00012 837 Gene3D Phosphorylase Kinase; domain 1 460 572 - -
Vium6631g00012 837 FunFam Receptor-like protein kinase FERONIA 573 788 - -
Vium6631g00012 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Vium6631g00012 837 Pfam Malectin-like domain 34 386 IPR024788 -
Vium6631g00012 837 CDD STKc_IRAK 503 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6631g00012 Vium-Chr6631 108045 111287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6631g00012 15 837 Receptor kinase-like Gene Family AT3G46290 65.704 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium6631g00012 Malectin_like 1.2e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6631g00012 - - gmx:100806488 1439.86