Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6631g00010 ATGTACACACACAGCAACGCCTCCCTCCCACGCTCCGCCGAATCCCTCTCCCATTTTCTCTCTCCGCAGGACGCATCCACGCTGTCGCCAATGCAGTACGCCGCTGCTCCTCAGCCGCAGCACCACCAAGTTGCCCTGGGCGAGTTTGATTCAGAGGCGAGTTCGAATAACACGTACAACAGCTGCAGCAGCGGGTGCACCAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTTACGAGAGTCGGCGAGTGCAAAGGAGCGTAAGCAGCCACTCGCTGCAGAAGAACAGTGGTGGGCCCCACCACCCCTTTTCTCCTCTCTTCGCTCAGTTGCTTGACTCCCACAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTTCATGGAATGCAATATTATCATCATTCAGATAGTCCATTGTCGAGTGAAAGTAGCTTGATCATAGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAAGTGAGGATTGAGAGATATAGGAGCAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCATGCAGGAAGACATTGGCAGATAGCAGGCCAAGAATCAGAGGGCGATTTGCAAAGAATGAGGAAATTGCAATGAACCCTCCGGTTCAGTGGAGCCATATGGGTACCGGAGAGGAAGAGGACGAGGAAGAAGAGAATTGGGCCAATTTCTTTGATTCCATAGTTCCTGCAAATCTTGGTCAGGAACCTCATGGCAGTAGTTCCTCCTTTGGCGCTTTCTATTAA 789 0.5158 MYTHSNASLPRSAESLSHFLSPQDASTLSPMQYAAAPQPQHHQVALGEFDSEASSNNTYNSCSSGCTSYMGSPSSLASYESRRVQRSVSSHSLQKNSGGPHHPFSPLFAQLLDSHNGPVRRACSTGDLQRFHGMQYYHHSDSPLSSESSLIIEEMSRTSPYSPEEKKVRIERYRSKRNQRNFGKKIKYACRKTLADSRPRIRGRFAKNEEIAMNPPVQWSHMGTGEEEDEEEENWANFFDSIVPANLGQEPHGSSSSFGAFY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6631g00010 262 ProSiteProfiles CCT domain profile. 166 208 IPR010402 GO:0005515
Vium6631g00010 262 MobiDBLite consensus disorder prediction 77 102 - -
Vium6631g00010 262 Pfam CCT motif 168 208 IPR010402 GO:0005515
Vium6631g00010 262 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 32 235 IPR045281 GO:0009909
Vium6631g00010 262 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6631g00010 Vium-Chr6631 88396 91061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6631g00010 162 211 C2C2-CO-like Transcription Factor Family AT5G15850 50.000 2.17e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium6631g00010 CCT 4.1e-18 CL0281