Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6631g00005 ATGAGAGTGAGAAGAATGGAGGCATTTCCCAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATGGAGTCGCGAGCCGAGGAGCCACAGGAGCAGCAGCAACGCGGCGGTCCCGATGAAGTCACAGCCACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGGTTCCATCACAAACACTCGCCGCGGTGCTCGGTGAGCCTCCGGCGGAGGTCGGAAATGCCGCGAAGCGCGCTGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGGAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGTAAGCCGAGGAGGGACTCCGGAAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCGAGGGTTTCGGAGGACCTGAGGGATGCTCTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGATTTTTCAAGATGACGGGTTACACATCGAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCGGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCCTTACAAACGGGTCAGACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAACTTATAGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTCTCGACAAAAAGAAAAGGCAAATAGTACAGTATCTGAGCTGTTGCTGGCTGTGAGGAGGCCACGGGCGCTGAGTGAATCAGGAGGCCGTCCCTTGATCAGAAAGTCAGCATCCGGTGATGATGATCAAGAAAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGCAAATCACATGCAGGAGACACAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTTTGGAAGCTTCAATGACGAAGCTGTTATTAAGGATAGTTCTGAGAGTAGTGATGAAGATGATGAGAGGTCTGGTAGTTTTGATGGCAAAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTTATTACTGATCCTAGGCTGCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAGATTAGAGAGGCCATTGACACTCAAACTGACGTCACTGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTACTTTATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCAAAAGAGGGAGAACAATTGGTAAAAGAAACTGCTGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATTGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAAAAGGGTATTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACAAAAACACATGTTTGTTTGATAACCGATTATTGTTCTGGTGGAGAACTATTCATTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATCTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCCATAAATGAAAAGAAGAAAGCAAATAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTATCGGTTGCTGAACAGAGAGACCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAAAACCATCCATTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACTAAACCTCCTGAGCTTGATGCACCTCTCTTCGGAACAACTGAAGAAGAAAAGGAAGCCAATTTTGAAGATAAAGTGCAAGAGGAGATGAACGTCTTCTGA 2940 0.466 MRVRRMEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWMESRAEEPQEQQQRGGPDEVTATSWMALKDSTPPVPSQTLAAVLGEPPAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSAKVTGKPRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDSRQKEKANSTVSELLLAVRRPRALSESGGRPLIRKSASGDDDQEKPEKSSRRKSESVASFRRKSHAGDTSSMERITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDEAVIKDSSESSDEDDERSGSFDGKVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFILLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSINEKKKANKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRETKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFGTTEEEKEANFEDKVQEEMNVF 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6631g00005 979 CDD PAS 195 284 IPR000014 -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 344 393 - -
Vium6631g00005 979 SMART pas_2 450 519 IPR000014 -
Vium6631g00005 979 SMART pas_2 170 239 IPR000014 -
Vium6631g00005 979 Coils Coil 580 600 - -
Vium6631g00005 979 FunFam Putative LOV domain-containing protein 182 338 - -
Vium6631g00005 979 ProSitePatterns Protein kinases ATP-binding region signature. 655 678 IPR017441 GO:0005524
Vium6631g00005 979 Gene3D PAS domain 182 336 - -
Vium6631g00005 979 Gene3D PAS domain 437 601 - -
Vium6631g00005 979 Pfam PAS domain 189 285 IPR000014 -
Vium6631g00005 979 Pfam PAS domain 471 563 IPR000014 -
Vium6631g00005 979 Gene3D Transferase(Phosphotransferase) domain 1 733 948 - -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 426 444 - -
Vium6631g00005 979 FunFam LOV domain-containing protein 648 732 - -
Vium6631g00005 979 FunFam LOV domain-containing protein 437 601 - -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 111 165 - -
Vium6631g00005 979 Pfam Protein kinase domain 652 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00005 979 MobiDBLite consensus disorder prediction 17 47 - -
Vium6631g00005 979 FunFam Putative LOV domain-containing protein 733 948 - -
Vium6631g00005 979 ProSiteProfiles PAS repeat profile. 448 521 IPR000014 -
Vium6631g00005 979 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 415 444 - -
Vium6631g00005 979 ProSiteProfiles PAC domain profile. 242 296 IPR000700 -
Vium6631g00005 979 CDD PAS 463 563 IPR000014 -
Vium6631g00005 979 SUPERFAMILY Protein kinase-like (PK-like) 633 955 IPR011009 -
Vium6631g00005 979 CDD STKc_phototropin_like 648 955 - -
Vium6631g00005 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Vium6631g00005 979 SMART serkin_6 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00005 979 ProSiteProfiles PAC domain profile. 522 576 IPR000700 -
Vium6631g00005 979 ProSiteProfiles PAS repeat profile. 168 239 IPR000014 -
Vium6631g00005 979 SMART pac_2 245 287 IPR001610 -
Vium6631g00005 979 SMART pac_2 525 567 IPR001610 -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 1 82 - -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 59 82 - -
Vium6631g00005 979 ProSiteProfiles Protein kinase domain profile. 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00005 979 NCBIfam PAS domain S-box protein 195 289 IPR000014 -
Vium6631g00005 979 NCBIfam PAS domain S-box protein 473 563 IPR000014 -
Vium6631g00005 979 MobiDBLite consensus disorder prediction 334 398 - -
Vium6631g00005 979 PANTHER FLIPPASE KINASE 1-RELATED 541 955 - -
Vium6631g00005 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 189 281 IPR035965 -
Vium6631g00005 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 464 563 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6631g00005 Vium-Chr6631 28854 38271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6631g00005 9 979 AGC Kinase Gene Family AT3G45780 69.184 0.0 1325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium6631g00005 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6631g00005 K20715 - gmx:100804524 1754.95