Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6631g00004 ATGGAGGCATTTCCCAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATGGAGTCGCGAGCCGAGGAGCCACAGGAGCAGCAGCAACGCGGCGGTCCCGATGAAGTCACAGCCACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGGTTCCATCACAAACACTCGCCGCGGTGCTCGGTGAGCCTCCGGCGGAGGTCGGAAATGCCGCGAAGCGCGCTGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGGAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGTAAGCCGAGGAGGGACTCCGGAAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCGAGGGTTTCGGAGGACCTGAGGGATGCTCTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGATTTTTCAAGATGACGGGTTACACATCGAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCGGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCCTTACAAACGGGTCAGACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAACTTATAGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTCTCGACAAAAAGAAAAGGCAAATAGTACAGTATCTGAGCTGTTGCTGGCTGTGAGGAGGCCACGGGCGCTGAGTGAATCAGGAGGCCGTCCCTTGATCAGAAAGTCAGCATCCGGTGATGATGATCAAGAAAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGCAAATCACATGCAGGAGACACAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTTTGGAAGCTTCAATGACGAAGCTGTTATTAAGGATAGTTCTGAGAGTAGTGATGAAGATGATGAGAGGTCTGGTAGTTTTGATGGCAAAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTTATTACTGATCCTAGGCTGCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAGATTAGAGAGGCCATTGACACTCAAACTGACGTCACTGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTACTTTATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCAAAAGAGGGAGAACAATTGGTAAAAGAAACTGCTGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATTGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAAAAGGGTATTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACAAAAACACATGTTTGTTTGATAACCGATTATTGTTCTGGTGGAGAACTATTCATTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATCTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCCATAAATGAAAAGAAGAAAGCAAATAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTATCGGTTGCTGAACAGAGAGACCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAAAACCATCCATTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACTAAACCTCCTGAGCTTGATGCACCTCTCTTCGGAACAACTGAAGAAGAAAAGGAAGCCAATTTTGAAGATAAAGTGCAAGAGGAGATGAACGTCTTCTGA 2925 0.4663 MEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWMESRAEEPQEQQQRGGPDEVTATSWMALKDSTPPVPSQTLAAVLGEPPAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSAKVTGKPRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDSRQKEKANSTVSELLLAVRRPRALSESGGRPLIRKSASGDDDQEKPEKSSRRKSESVASFRRKSHAGDTSSMERITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDEAVIKDSSESSDEDDERSGSFDGKVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFILLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSINEKKKANKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRETKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFGTTEEEKEANFEDKVQEEMNVF 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6631g00004 974 Gene3D PAS domain 177 331 - -
Vium6631g00004 974 CDD STKc_phototropin_like 643 950 - -
Vium6631g00004 974 Gene3D Transferase(Phosphotransferase) domain 1 728 943 - -
Vium6631g00004 974 NCBIfam PAS domain S-box protein 190 284 IPR000014 -
Vium6631g00004 974 NCBIfam PAS domain S-box protein 468 558 IPR000014 -
Vium6631g00004 974 ProSiteProfiles PAC domain profile. 517 571 IPR000700 -
Vium6631g00004 974 SMART pas_2 165 234 IPR000014 -
Vium6631g00004 974 SMART pas_2 445 514 IPR000014 -
Vium6631g00004 974 FunFam Putative LOV domain-containing protein 728 943 - -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 329 393 - -
Vium6631g00004 974 Gene3D PAS domain 432 596 - -
Vium6631g00004 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Vium6631g00004 974 SMART serkin_6 644 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00004 974 FunFam LOV domain-containing protein 643 727 - -
Vium6631g00004 974 Gene3D Phosphorylase Kinase; domain 1 643 727 - -
Vium6631g00004 974 Coils Coil 575 595 - -
Vium6631g00004 974 ProSiteProfiles PAC domain profile. 237 291 IPR000700 -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 1 79 - -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 54 78 - -
Vium6631g00004 974 FunFam Putative LOV domain-containing protein 177 333 - -
Vium6631g00004 974 CDD PAS 458 558 IPR000014 -
Vium6631g00004 974 Pfam Protein kinase domain 647 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00004 974 Pfam PAS domain 466 558 IPR000014 -
Vium6631g00004 974 Pfam PAS domain 184 280 IPR000014 -
Vium6631g00004 974 PANTHER FLIPPASE KINASE 1-RELATED 457 950 - -
Vium6631g00004 974 CDD PAS 190 279 IPR000014 -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 339 388 - -
Vium6631g00004 974 SMART pac_2 520 562 IPR001610 -
Vium6631g00004 974 SMART pac_2 240 282 IPR001610 -
Vium6631g00004 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 184 276 IPR035965 -
Vium6631g00004 974 ProSiteProfiles PAS repeat profile. 163 234 IPR000014 -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 106 160 - -
Vium6631g00004 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 459 558 IPR035965 -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 12 42 - -
Vium6631g00004 974 ProSiteProfiles PAS repeat profile. 443 516 IPR000014 -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 410 439 - -
Vium6631g00004 974 SUPERFAMILY Protein kinase-like (PK-like) 628 950 IPR011009 -
Vium6631g00004 974 FunFam LOV domain-containing protein 432 596 - -
Vium6631g00004 974 MobiDBLite consensus disorder prediction 421 439 - -
Vium6631g00004 974 ProSiteProfiles Protein kinase domain profile. 644 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00004 974 ProSitePatterns Protein kinases ATP-binding region signature. 650 673 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6631g00004 Vium-Chr6631 28041 38271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6631g00004 4 974 AGC Kinase Gene Family AT3G45780 69.184 0.0 1325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium6631g00004 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6631g00004 K20715 - gmx:100804524 1754.95