Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6631g00001 ATGGGTTGCTTTTGTTGCGCGGGGAAATCATGCACCAATTCGGACACTGAAGAGTATGGCCAGAACTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAAGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAAGAGGGTTCTCAGGATGAAAGAGATAATGGCAATCGGGCGCAGTCATTCAGTTTTAATGAACTTGAAGCTGCGACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAATTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGATCTTCGGCCTGGTAGCAAACCACTGGATTGGAACACAAGAATGAAAATAGCAGCCGGGGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTGATATATCGCGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCAGATTTTGGCCTGGCAAAAGTAGGTCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAGTTGACATTTAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTTATCACAGGGCGAAAGGCTATTGATCATATGAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGATAGGAAAAAGTTTCCCCAGATGGTTGATCCTTTACTTGAAGGTCGATATCCGGTGAGAGGGTTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCTGTAATAGTTGATGTTGTTACAGCTCTAAATTACTTAGCTTCTCAGAAGTATGATCCTCACCTTCATCCAGCACAAAGCTCTAGAAGAAGTCCACCTTCTCAGGTAATGCAAAGGGATGATGATGATGAACGTAGACTTATTTTAACCACCGAGCATGTGACAGACAGATCATAA 1251 0.4373 MGCFCCAGKSCTNSDTEEYGQNFDQKPSNFTAAESVKVDFKVNGKKEDGSKGDQLALDVKSLNLKEEGSQDERDNGNRAQSFSFNELEAATGNFTADCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEFMPLGSLENHLLDLRPGSKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHMKPAKEQNLVAWARPLFRDRKKFPQMVDPLLEGRYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPHLHPAQSSRRSPPSQVMQRDDDDERRLILTTEHVTDRS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6631g00001 416 FunFam probable serine/threonine-protein kinase RLCKVII 66 170 - -
Vium6631g00001 416 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00001 416 MobiDBLite consensus disorder prediction 393 416 - -
Vium6631g00001 416 Pfam Protein tyrosine and serine/threonine kinase 99 310 IPR001245 GO:0004672|GO:0006468
Vium6631g00001 416 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6631g00001 416 Gene3D Phosphorylase Kinase; domain 1 63 170 - -
Vium6631g00001 416 SUPERFAMILY Protein kinase-like (PK-like) 80 391 IPR011009 -
Vium6631g00001 416 CDD STKc_IRAK 100 369 - -
Vium6631g00001 416 MobiDBLite consensus disorder prediction 379 416 - -
Vium6631g00001 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vium6631g00001 416 FunFam Serine/threonine-protein kinase PBS1 171 386 - -
Vium6631g00001 416 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vium6631g00001 416 PANTHER OS07G0668900 PROTEIN 47 379 - -
Vium6631g00001 416 Gene3D Transferase(Phosphotransferase) domain 1 171 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6631g00001 Vium-Chr6631 10269 14293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6631g00001 60 373 Glycoside Hydrolase AT3G07070 62.025 1.67e-145 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium6631g00001 PK_Tyr_Ser-Thr 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6631g00001 - - gmx:100804000 756.903