Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6614g00003 ATGATGGGATTCAACAGAAACCTCTTCTGGCTTTCTGCCTTTGTCATTTTTCTCTTTTCTGTCTCCTTTATTTTCTATTGCACTTCACCTTCCCCCAGCGATTACACAGCCATTGGTCCTCACGATAGTTTCAGTTTCCAGCTTGGTATATTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACACCATCACCACCATCATCATCATCATAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAACGTGAGTCTTGTTTTCACGGTTGATTTAAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGCTGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGATATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACTGGCGGTACTTCCTACAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGCGGTGGGGGCACAAGCAGTGGCACTGAGAGTCACCGGTGATCAAGCAGCCTTCTATGGATGTGGATTTTATGGTGCACAGGATACACTGAATGATGATGGTGGAAGACATTATTTCAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGATGAGATTAGTGGGTCGATCACTGCTCAAGGGAGGCAATCGATGGATGAAGAAAGTGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTATGCCACTGTCATCTTCTCGACAACATACATGTCTGATGTCGTAGCACCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCGGAGCGTCTTCTTTGGGGAGTACAGTTGCCATGGAGCTGGAGCAAATTATGCATCCAGAGTCTCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCTTACATGGACATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATCGTCATAGTTATGTTAATCCTTCGTATATCTAA 1224 0.4355 MMGFNRNLFWLSAFVIFLFSVSFIFYCTSPSPSDYTAIGPHDSFSFQLGIFSGAQDLVSLITSIARRRHHHHHHHHHKEKCEGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVAVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGAVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKDEISGSITAQGRQSMDEESGFSFVNCSIVGSGRVWLGRAWGPYATVIFSTTYMSDVVAPEGWNDWRDPSRDRSVFFGEYSCHGAGANYASRVSYAKQLRDYEANSYMDISYIDGNDWLLNYRHSYVNPSYI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6614g00003 407 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 394 - -
Vium6614g00003 407 FunFam Pectinesterase 94 399 - -
Vium6614g00003 407 SUPERFAMILY Pectin lyase-like 97 396 IPR011050 -
Vium6614g00003 407 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Vium6614g00003 407 Gene3D - 94 403 IPR012334 -
Vium6614g00003 407 Pfam Pectinesterase 102 391 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6614g00003 Vium-Chr6614 4689 8457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6614g00003 93 394 Carbohydrate Esterase AT1G05310 54.098 1.18e-118 349